Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3478 208 1e-48 >seq3478 Length=3494213 Score = 208 bits (230), Expect = 1e-48 Identities = 959/1494 (64%), Gaps = 48/1494 (3%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| ||| || || ||| | ||||| |||| ||||| |||||| Sbjct 2084510 CTTCATCTCCTCATTCCACAGGCCCCTCTCTGTCAGGTCTTTGAGCAGGTGGGGGTTGAC 2084451 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | ||| | | ||||||||| ||||||| | || | Sbjct 2084450 GATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGAT 2084391 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || |||||||| | || || || Sbjct 2084390 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATTGGGGACAGCAGCAG 2084331 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 110853 ||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 2084330 GCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 2084271 Query 110854 C-TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCT 110912 | |||| || || |||||||||| |||| || | || | | | || || || | Sbjct 2084270 CGTTGGCGTCTTCT-CCCACATGTCGTACTGGAGAATGCCCTTACTCACCGGCGAGCCTT 2084212 Query 110913 CAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGT 110972 | | || ||||||| || | | | |||| || |||||||| |||| | || | Sbjct 2084211 CGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCTTCCAAAGCGGCAT 2084152 Query 110973 GATACATGGTTTCAAAGATACG-------AGCA-TTCATCTCCTTGGCTTCATCTGAATC 111024 |||||| || |||||||| | |||| || | | | ||||| || Sbjct 2084151 AATACATAGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTT--------TC 2084100 Query 111025 AAATGCGTAGCGGCACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAG 111083 ||| | || || || || || || |||| || | || || || || | || || | Sbjct 2084099 AAAGGGATAACG-CATAAGGATGAAAGCATCAGCCAATCCCTGGACCCCGATTCCTATCG 2084041 Query 111084 GTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGA 111143 | ||||| ||||| || ||| | | || || || || || | || |||| || | Sbjct 2084040 GCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAA 2083981 Query 111144 CTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC--ATGA-AGTTTTTCATAATCAA 111200 | ||| | || || ||||| | || | | ||| | ||||| | | ||| Sbjct 2083980 CCTTGTTCAAGTTCCTG---ACAATTACTTTGGTCACGGATGCCAATTTTTTAAAGTCAT 2083924 Query 111201 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 111260 |||| || ||| |||| ||| | || |||| || |||| ||||||||| | Sbjct 2083923 AAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAGAGGCCAGATTGCAAACCG 2083867 Query 111261 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCG 111320 || ||| ||||| |||||||| | ||||| || || | |||| | ||| || | Sbjct 2083866 CCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGAGGTTGCTGCACTTGATGG 2083807 Query 111321 TCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 111380 | |||| ||||| ||||| |||||| ||||||| ||||| ||||||| |||||| |||| Sbjct 2083806 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTTTGTAGACCATGTACGGCG 2083747 Query 111381 TCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATG 111439 |||| || || ||||| || | || || || | ||| | | | | | || || Sbjct 2083746 TCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACAC 2083687 Query 111440 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 111499 || || ||| |||||| ||| || | |||||||| ||||||||||||| ||| | Sbjct 2083686 GC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCC-CA 2083629 Query 111500 GCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTC 111558 || || || || || | | | ||||| | || ||||| | | | ||| Sbjct 2083628 GCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCGTTGTTCTC 2083569 Query 111559 AACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGC 111618 |||||||||||||| ||||| || |||||||||| | || || || || || Sbjct 2083568 CACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTG 2083509 Query 111619 CTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATG 111677 ||| || | || ||| || | | ||| ||||| || | | ||| |||||| | Sbjct 2083508 CTCCTCCTTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCAGG 2083450 Query 111678 GCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGC 111733 |||| || || | |||| | || |||| | |||| | |||| ||||| ||| Sbjct 2083449 GCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCC-CCCTGATCAACATAACGC 2083391 Query 111734 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 111793 |||||| ||| | || | | |||||| | | || | || || || || || Sbjct 2083390 GCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGGAACAGCCGTTGGTGCCG 2083331 Query 111794 CGAATACGAGAT-TTATTGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCC 111850 || || | ||| ||| | || | || || || ||||| || ||||| Sbjct 2083330 GCGAT-GTAGCTCCCCGTGGATCTAATGCAGC-TGACTG-CCACGCCAATCCCTCCAGCT 2083274 Query 111851 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 111910 | || ||||| | || || | | | || || | ||||| || | ||| ||| ||| Sbjct 2083273 GATTTGGAGATGAGGGCGCAATGCTTTAGCGTGTCGTAGATCCCCTCGATGCTGTCATCC 2083214 Query 111911 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 111970 || |||||| |||||||| ||||||| |||||| || || ||||||||||||||| Sbjct 2083213 TTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGG 2083154 Query 111971 GTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGA 112029 || || | ||||| ||||| || | | |||| | || ||| ||||| | ||| | Sbjct 2083153 GTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTCTCGATGACTGC 2083095 Query 112030 ATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || || || ||||||||| || | || |||| ||||| ||||| ||| || Sbjct 2083094 TTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 2083041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628004091828000