Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq3478 197 2e-45
seq3467 86.0 8e-12
seq2977 82.4 9e-11
>seq3478
Length=3494213
Score = 197 bits (218), Expect = 2e-45
Identities = 889/1383 (64%), Gaps = 28/1383 (2%)
Strand=Plus/Minus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||||
Sbjct 2084416 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2084357
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301
|| |||||||| || | || || |||||||| | | || | || || |||
Sbjct 2084356 GCCGTGGGCATTGGGGACAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 2084297
Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 118360
|| || ||| ||| |||| | | | ||| | | || |||||| || |||||||
Sbjct 2084296 TTCAGCAGCTTCC-AGTCCCACAGGTCCGTTGGCGTCTTCTCCCACATGTCGTACTGGAG 2084238
Query 118361 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 118420
|| || | | | ||||| || || | |||||||| | ||| | | ||||
Sbjct 2084237 AATGCCCTTACTCACCGGCGAGCCTTCGTACGTCTCATAGGTGCCGAGCTCGGCGGCCAG 2084178
Query 118421 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGC 118480
||| ||||||| || | || || | |||||| || ||||| || | || | ||
Sbjct 2084177 CTCGCAGCTCGCTTCCAAAGCGGCATAATACATAGTCTCAAAGATCTGGATGTTGA--GC 2084120
Query 118481 C-TTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACC 118537
||| |||||| | ||||| | || ||| || || || |||| || | ||
Sbjct 2084119 AGTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATAAGGATGAAAGCATCAGCCAATCC 2084061
Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGG 118597
||||| |||| || || || | || | ||| || ||| ||| || ||||| ||
Sbjct 2084060 CTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGG 2084001
Query 118598 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 118657
|| | || | ||||||||| | || | || || | || || || | |||
Sbjct 2084000 GTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGG-ATG 2083942
Query 118658 AAGCTTTTCGTAA-TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716
|||| || ||| || | || ||| |||| ||| | || |||| |
Sbjct 2083941 CCAATTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGACAG 2083885
Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776
| |||||||| || || | ||| ||||| ||||||||| | ||||||||||| |
Sbjct 2083884 AGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAGA 2083825
Query 118777 AGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836
||| | ||| |||||||||| |||| || || ||| |||| || ||||| |
Sbjct 2083824 GGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCTT 2083765
Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896
|||| | |||||| |||||||| || || || || |||| || || || | ||| | |
Sbjct 2083764 TGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCT 2083705
Query 118897 CGGCAGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCT 118955
||| ||| | || || | | |||||| | ||| || | |||||||| ||
Sbjct 2083704 GCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCTTCTCATATCTGGTGTAGAGTTCT 2083646
Query 118956 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 119015
|||||||| || ||| | ||| ||||| || | | || || | || |||
Sbjct 2083645 TCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGAC 2083586
Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075
|| | | | ||| |||||||||||||||||||| |||||||| || || ||||
Sbjct 2083585 CAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAC 2083526
Query 119076 AGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134
|| |||| || ||| || | | ||| || || || ||||| ||||| |
Sbjct 2083525 AGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAA 2083467
Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAG 119190
| ||| |||||| || |||||||||| |||| | || ||| | | ||
Sbjct 2083466 CACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCC- 2083408
Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250
|||| | ||||| | ||| ||| ||| | || | | |||||| | || || | ||
Sbjct 2083407 CCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCGTTGG 2083348
Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCGTGGATGTGCAT 119308
| ||| || || || || | ||| ||| | || | || || ||
Sbjct 2083347 AACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGC-TGACTGC-CAC 2083290
Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368
||||| || || || | || ||||| | ||||| | | | || || ||||||||||
Sbjct 2083289 GCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTTAGCGTGTCGTAGATCCC 2083230
Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428
||||| |||| |||| | |||| ||||||||||| |||| || |||||| ||
Sbjct 2083229 CTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGT 2083170
Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGT 119487
||||| |||||||| || || | |||||| ||||| || | | |||| | || ||
Sbjct 2083169 TCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGT 2083111
Query 119488 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 119547
||||||| | ||| || || || |||||| || || | | |||| ||| | ||
Sbjct 2083110 AGGTCTCGATGACTGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCA 2083051
Query 119548 TGT 119550
|||
Sbjct 2083050 TGT 2083048
>seq3467
Length=3272559
Score = 86.0 bits (94), Expect = 8e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 2318294 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 2318235
Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144
||| |||||| || || || || || |||||||||||||||||||||
Sbjct 2318234 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 2318185
Score = 86.0 bits (94), Expect = 8e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 2328656 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 2328715
Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144
||| |||||| || || || || || |||||||||||||||||||||
Sbjct 2328716 TCAGCCAGAAGATGGCGGCGAACGAACCCGAGAAGAAGATCCCCTCCACA 2328765
>seq2977
Length=7416971
Score = 82.4 bits (90), Expect = 9e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094
||||||| | | ||||| || || ||| ||| || || ||||| | |||| |||||
Sbjct 6481855 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGCTAAGGCCAGGCATTAACCCCCTCTTCT 6481914
Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144
||| |||| | || ||| |||||| |||||||||||||| || ||||||
Sbjct 6481915 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 6481964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618407718285800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |