Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3478 161 1e-34 seq3467 87.8 2e-12 seq1157 86.0 7e-12 >seq3478 Length=3494213 Score = 161 bits (178), Expect = 1e-34 Identities = 943/1486 (63%), Gaps = 32/1486 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||||| | || || || ||| || || || | ||| Sbjct 2083041 CCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATCCACGGGACGGATATCGAAGCAGTC 2083100 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||| | | || ||||| ||||| | || |||||||| Sbjct 2083101 ATCGAGACCTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCCCCGACCCTCTT 2083159 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||||||| || || || || ||||||| |||||||| |||||| ||||| || Sbjct 2083160 CAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGA 2083219 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | || ||||| | || || | | | || || | ||||| || | ||||| Sbjct 2083220 CAGCATCGAGGGGATCTACGACACGCTAAAGCATTGCGCCCTCATCTCCAAATCAGCTGG 2083279 Query 104461 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 104517 || ||||| || || || | || | ||| ||| | || || || || Sbjct 2083280 AGGGATTGGCGTGG-CAGTCA-GCTGCATTAGATCCACGGGGAGCTAC-ATCGCCGGCAC 2083336 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || || | || | | |||||| | | || | ||| ||||||||| || Sbjct 2083337 CAACGGCTGTTCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTA 2083396 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 ||| |||| | |||| | |||| || | |||| | || || ||||| |||| Sbjct 2083397 TGTTGATCAGGG-GGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGC 2083455 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || ||| | | || ||||| ||| || ||| || | |||||| ||| Sbjct 2083456 ACTTCGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAG 2083515 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | | || || |||| ||| || ||||| || || |||||||||||| | || ||| | | Sbjct 2083516 CCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACA 2083575 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 | | ||||| || | ||||| | | | || || || || ||| | ||| Sbjct 2083576 ACGAAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTGCTG-GGGG 2083634 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACGGT 104871 ||||||||||||| || ||||| | || ||| | || || ||| || ||| ||| Sbjct 2083635 GAGGAGTTTGAAGAACTCTACACCAGATATGAGAAGGAGGGGAGGGTGA-AGCGTGTGGT 2083693 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 | ||| | | ||| | || || || |||| || || || || || || || || Sbjct 2083694 GAAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTA 2083753 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||| | |||||||| ||||| ||| ||||| || || ||||| |||| ||||| Sbjct 2083754 CATGGTCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAA 2083813 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 | | ||| ||||| || |||||| | || | || ||| || ||| ||| || || Sbjct 2083814 GTGCAGCAACCTCTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCGGTTTG 2083873 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 105111 || || || || |||||||| || ||| || || ||| ||| | ||| | Sbjct 2083874 CAATCTGGCCTCTGTCGCTCTCAACATGTACGTCACCCCTGAG---CGGACTTATGACTT 2083930 Query 105112 TGAAAAACTCCACGAAGTTACGAA---AACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | ||||| | || || || || ||| || ||| | |||| ||||| || Sbjct 2083931 TAAAAAATTGGCATCCGTGACCAAAGTAATTGT---CAGGAACTTGAACAAGGTTATCGA 2083987 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || | ||||| || || || | | || || ||| | ||| | || || || Sbjct 2083988 CATCAACTACTACCCGGTGGAAGAAGCCAGGAGGTCGAACATGCGCCACAGGCCGATAGG 2084047 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 105288 |||| || ||||| | || |||| ||||| ||| || | | ||||| | Sbjct 2084048 AATCGGGGTCCAGGGATTGGCTGATGCTTTCATCCTTATGCGTTATCCCTTTGAAAGCCC 2084107 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||| || | |||| | || |||||||| |||||| | |||||| | || || Sbjct 2084108 CGAGGCTCAACTGCTCAACATCCAGATCTTTGAGACTATGTATTATGCCGCTTTGGAAGC 2084167 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 ||| | ||| |||| | | || | ||||| || | || || || || | | Sbjct 2084168 GAGCTGCGAGCTGGCCGCCGAGCTCGGCACCTATGAGACGTACGAAGGCTCGCC-GGTGA 2084226 Query 105409 ACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGG 105466 ||||| | || || | || ||||||| || || |||| | | | |||| | Sbjct 2084227 GTAAGGGCATTCTCCAGTACGACATGTGGG-AGAAGACGCCAACGGACCTGTGGGACT-G 2084284 Query 105467 GAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 |||||| || ||||| ||| | | || | | ||||| || || || | || Sbjct 2084285 GAAGCTGCTGAAGGAGAAGATCGCCAAACATGGCGTGAGGAACAGCCTGCTGCTGTCCCC 2084344 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 |||||| || ||||||||||| || ||| |||| || || || | | | || ||||||| Sbjct 2084345 AATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACAC 2084404 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCT 105645 | |||||||| | | ||| |||| |||||| ||| |||||| || || Sbjct 2084405 AAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGATCGTCAACCCCCACCT 2084464 Query 105646 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | | ||||| | ||||| || || ||| |||| |||||| Sbjct 2084465 GCTCAAAGACCTGACAGAGAGGGGCCTGTGGAATGAGGAGATGAAG 2084510 >seq3467 Length=3272559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| ||||||||||| ||||| ||| ||| || | ||||| Sbjct 2318174 GCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGGCTG 2318233 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 2318234 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 2318293 Query 94936 G 94936 | Sbjct 2318294 G 2318294 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| ||||||||||| ||||| ||| ||| || | ||||| Sbjct 2328776 GCCTTTGCCGCTGTGGAGGGGATCTTCTTCTCGGGTTCGTTCGCCGCCATCTTCTGGCTG 2328717 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 2328716 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 2328657 Query 94936 G 94936 | Sbjct 2328656 G 2328656 >seq1157 Length=2784775 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 104886 TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAG 104945 ||||| | || || | |||| || || || |||||||||||||||||| ||||||| | Sbjct 2749473 TGTGGTACGCCATCATTGAGTCGCAGACAGAAACTGGTACACCATACATGGTTTACAAGG 2749532 Query 104946 ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCT 105005 | ||||| ||| |||||||||||| | || |||| ||||| |||||| | Sbjct 2749533 ATGCCTGCAACAGAAAGAGTAATCAGCAAAACCTGGGCACTATCAAATCCAGCAATCTGT 2749592 Query 105006 GTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 | ||||| ||| | || | || |||||||||| Sbjct 2749593 GCACAGAGATCGTAGAGTACACGAGCAAAGATGAG 2749627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583234881348200