Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06]
3,555 sequences; 859,842,118 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq3478 208 8e-49
seq3467 84.2 2e-11
seq791 82.4 8e-11
seq402 82.4 8e-11
>seq3478
Length=3494213
Score = 208 bits (230), Expect = 8e-49
Identities = 527/785 (67%), Gaps = 30/785 (4%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC--ACGCGTGTCCGTGAGACGTA 53250
||||| | || || |||| |||||||| |||| || | || ||| ||||| ||
Sbjct 2083054 TCATGAGGGTGGCTGTGGGAATCCACGG-GACGGATATCGAAGCA-GTCATCGAGACCTA 2083111
Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310
| || | || | |||| || || |||||| | || ||||| ||||| ||||| ||
Sbjct 2083112 CAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAAC 2083171
Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370
|| || ||| |||| |||||||||||| | || |||||||||||| ||||| ||
Sbjct 2083172 CAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGG 2083231
Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430
|||||||| ||||| ||| | || |||| ||||||||| | | || || || || |
Sbjct 2083232 GATCTACGACACGCTAAAGCATTGCGCCCTCATCTCCAAATCAGCTGGAGGGATTGGCGT 2083291
Query 53431 -CCA--CTGCTCGA--ACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTC 53485
|| | ||| | | ||| | | | | || ||| || || ||||||
Sbjct 2083292 GGCAGTCAGCTGCATTAGATCCACGGGGA-GCTAC----ATCGCCGGCACCAACGGCTGT 2083346
Query 53486 GCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAG 53545
|| | || |||| || ||| | | || | ||||||||| || || || || | |||
Sbjct 2083347 TCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAG 2083406
Query 53546 GGTGGTGGGAAGCGCAAG----GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601
|| ||| | | ||| || | |||||||| ||||| ||||| |||||| |||
Sbjct 2083407 GG----GGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGCACTTCGA 2083462
Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGA 53661
| | || || || |||||| ||| ||| | || ||| ||| | | ||
Sbjct 2083463 TGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAGCCAGGGA 2083522
Query 53662 CCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720
|||||| ||| || |||||||| || |||||||||||| | ||||||||| |||| |
Sbjct 2083523 CCTGTTCTAC-GCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAACGAAG 2083581
Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAG 53779
| |||| ||||||||| ||| ||| |||||||| || | | ||| || || ||||||
Sbjct 2083582 ACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTG-CTGGGGGGAGGAG 2083640
Query 53780 TTTAACGAGATGT--ATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGG 53837
||| | || | | | | || | | || |||| | ||| ||| ||||
Sbjct 2083641 TTTGAAGAACTCTACACCAGATATGAGAAG--GAGGGGAGGGTGAAGCGTGTGGTGAAGG 2083698
Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897
| | || ||||| |||||||| || || ||| || || || ||||||||||||
Sbjct 2083699 CTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGG 2083758
Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGA 53957
|||||| ||| | |||| ||||||||||||| |||| | ||| |||||| | |
Sbjct 2083759 TCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCA 2083818
Query 53958 GCAAC 53962
|||||
Sbjct 2083819 GCAAC 2083823
Score = 93.3 bits (102), Expect = 5e-14
Identities = 113/153 (74%), Gaps = 1/153 (1%)
Strand=Plus/Plus
Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551
|||||| || | |||||||| || || || || || |||||| |||||||||||||| |
Sbjct 2084330 CCTGCTGCTGTCCCCAATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 2084389
Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611
||||| | ||||| | |||||||||| |||||| || | || |||||| ||
Sbjct 2084390 CATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGAT 2084449
Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG-CAGA 55643
||||| ||||| |||| |||||| ||||
Sbjct 2084450 CGTCAACCCCCACCTGCTCAAAGACCTGACAGA 2084482
>seq3467
Length=3272559
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || || |||||||| ||||| ||||||||||| || |||| ||||||||||||||
Sbjct 2319177 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 2319118
Query 74523 CAGTCGAAAGGGTTCT 74538
|||| ||||||||||
Sbjct 2319117 AAGTCAAAAGGGTTCT 2319102
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || || |||||||| ||||| ||||||||||| || |||| ||||||||||||||
Sbjct 2327773 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 2327832
Query 74523 CAGTCGAAAGGGTTCT 74538
|||| ||||||||||
Sbjct 2327833 AAGTCAAAAGGGTTCT 2327848
>seq791
Length=3046141
Score = 82.4 bits (90), Expect = 8e-11
Identities = 91/116 (78%), Gaps = 4/116 (3%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACC-TGCCAGCCGCGTTCCAAACTG 152087
|||||||||||||| | |||||| | ||||||||||| ||| | | | |||||||||||
Sbjct 2076452 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCGTGCAATCTG-GTTCCAAACTG 2076510
Query 152088 T-CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142
| ||||| |||| | ||| || | ||||||| ||||| || ||||| || |||
Sbjct 2076511 TCCCAGA-GGCTGCAAGAGATTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAA 2076565
Score = 82.4 bits (90), Expect = 8e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 117440 CTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACC 117499
||| |||| ||||||||||| |||| | ||| ||||| |||| |||||||| ||||||
Sbjct 2076947 CTCACCTCTCCATGGTGATAGGCCGACATCTCAGCCACTGAGCCTGCCAGCTGTGCCACC 2077006
Query 117500 TTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGC 117559
|||| ||| | | |||| |||||| || || | |||||| | ||||| |||
Sbjct 2077007 TTCACCTCTCGCTTGTCGTTCCTCTTGAAACAACAGTACAACACCTTCCTCTGACCTGGT 2077066
Query 117560 TTCAGACC 117567
||||| ||
Sbjct 2077067 TTCAGTCC 2077074
>seq402
Length=1890673
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||||| || || ||||| || || ||| | || ||||| || ||
Sbjct 480025 GTGAAGATGTAACGAGGACTGGCTGCATCTTTTCCTCCATTGATGCGAGTACCAAACTGA 480084
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| ||||| || || ||||| ||||||| |||||||||||| || |||| ||| ||
Sbjct 480085 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGTGCCAGGTTCACT 480144
Query 117425 ATCGT 117429
|| ||
Sbjct 480145 ATGGT 480149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547191683089000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |