Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3478 208 8e-49 seq3467 84.2 2e-11 seq791 82.4 8e-11 seq402 82.4 8e-11 >seq3478 Length=3494213 Score = 208 bits (230), Expect = 8e-49 Identities = 527/785 (67%), Gaps = 30/785 (4%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC--ACGCGTGTCCGTGAGACGTA 53250 ||||| | || || |||| |||||||| |||| || | || ||| ||||| || Sbjct 2083054 TCATGAGGGTGGCTGTGGGAATCCACGG-GACGGATATCGAAGCA-GTCATCGAGACCTA 2083111 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | || | |||| || || |||||| | || ||||| ||||| ||||| || Sbjct 2083112 CAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAAC 2083171 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 || || ||| |||| |||||||||||| | || |||||||||||| ||||| || Sbjct 2083172 CAACAGGCCGCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGATGACAGCATCGAGGG 2083231 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||||||| ||||| ||| | || |||| ||||||||| | | || || || || | Sbjct 2083232 GATCTACGACACGCTAAAGCATTGCGCCCTCATCTCCAAATCAGCTGGAGGGATTGGCGT 2083291 Query 53431 -CCA--CTGCTCGA--ACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTC 53485 || | ||| | | ||| | | | | || ||| || || |||||| Sbjct 2083292 GGCAGTCAGCTGCATTAGATCCACGGGGA-GCTAC----ATCGCCGGCACCAACGGCTGT 2083346 Query 53486 GCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAG 53545 || | || |||| || ||| | | || | ||||||||| || || || || | ||| Sbjct 2083347 TCCAACGGGCTCGTCCCAATGTTGAGGGTTTACAACAACACAGCGCGTTATGTTGATCAG 2083406 Query 53546 GGTGGTGGGAAGCGCAAG----GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 || ||| | | ||| || | |||||||| ||||| ||||| |||||| ||| Sbjct 2083407 GG----GGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGGCACTTCGA 2083462 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGA 53661 | | || || || |||||| ||| ||| | || ||| ||| | | || Sbjct 2083463 TGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGAGCCAGGGA 2083522 Query 53662 CCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 |||||| ||| || |||||||| || |||||||||||| | ||||||||| |||| | Sbjct 2083523 CCTGTTCTAC-GCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAACAACGAAG 2083581 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAG 53779 | |||| ||||||||| ||| ||| |||||||| || | | ||| || || |||||| Sbjct 2083582 ACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGATGAGTG-CTGGGGGGAGGAG 2083640 Query 53780 TTTAACGAGATGT--ATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGG 53837 ||| | || | | | | || | | || |||| | ||| ||| |||| Sbjct 2083641 TTTGAAGAACTCTACACCAGATATGAGAAG--GAGGGGAGGGTGAAGCGTGTGGTGAAGG 2083698 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 | | || ||||| |||||||| || || ||| || || || |||||||||||| Sbjct 2083699 CTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACCGGGACGCCGTACATGG 2083758 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGA 53957 |||||| ||| | |||| ||||||||||||| |||| | ||| |||||| | | Sbjct 2083759 TCTACAAAGATGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCA 2083818 Query 53958 GCAAC 53962 ||||| Sbjct 2083819 GCAAC 2083823 Score = 93.3 bits (102), Expect = 5e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| || | |||||||| || || || || || |||||| |||||||||||||| | Sbjct 2084330 CCTGCTGCTGTCCCCAATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 2084389 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| | ||||| | |||||||||| |||||| || | || |||||| || Sbjct 2084390 CATCGAGGCCTACACAAGCAACATCTACACCCGCCGGGTGCTCTCGGGGGAGTTTCAGAT 2084449 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG-CAGA 55643 ||||| ||||| |||| |||||| |||| Sbjct 2084450 CGTCAACCCCCACCTGCTCAAAGACCTGACAGA 2084482 >seq3467 Length=3272559 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 2319177 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 2319118 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 2319117 AAGTCAAAAGGGTTCT 2319102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 2327773 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGGGAGATGTTCTCCATG 2327832 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| |||||||||| Sbjct 2327833 AAGTCAAAAGGGTTCT 2327848 >seq791 Length=3046141 Score = 82.4 bits (90), Expect = 8e-11 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACC-TGCCAGCCGCGTTCCAAACTG 152087 |||||||||||||| | |||||| | ||||||||||| ||| | | | ||||||||||| Sbjct 2076452 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCGTGCAATCTG-GTTCCAAACTG 2076510 Query 152088 T-CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 | ||||| |||| | ||| || | ||||||| ||||| || ||||| || ||| Sbjct 2076511 TCCCAGA-GGCTGCAAGAGATTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAA 2076565 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 117440 CTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACC 117499 ||| |||| ||||||||||| |||| | ||| ||||| |||| |||||||| |||||| Sbjct 2076947 CTCACCTCTCCATGGTGATAGGCCGACATCTCAGCCACTGAGCCTGCCAGCTGTGCCACC 2077006 Query 117500 TTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGC 117559 |||| ||| | | |||| |||||| || || | |||||| | ||||| ||| Sbjct 2077007 TTCACCTCTCGCTTGTCGTTCCTCTTGAAACAACAGTACAACACCTTCCTCTGACCTGGT 2077066 Query 117560 TTCAGACC 117567 ||||| || Sbjct 2077067 TTCAGTCC 2077074 >seq402 Length=1890673 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || ||||| || || ||| | || ||||| || || Sbjct 480025 GTGAAGATGTAACGAGGACTGGCTGCATCTTTTCCTCCATTGATGCGAGTACCAAACTGA 480084 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||| || || ||||| ||||||| |||||||||||| || |||| ||| || Sbjct 480085 CCCAGCGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGTGCCAGGTTCACT 480144 Query 117425 ATCGT 117429 || || Sbjct 480145 ATGGT 480149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547191683089000