Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3478 194 2e-44 seq3522 176 5e-39 >seq3478 Length=3494213 Score = 194 bits (214), Expect = 2e-44 Identities = 561/853 (66%), Gaps = 19/853 (2%) Strand=Plus/Minus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTGC 80965 || ||||||||||| || |||||||| || || |||| ||||||||||||||||| Sbjct 2083885 GAGGCCAGATTGCAAACCGCCACCTCGTCCTTGCTAGTGTA--CTCGACGATTTCCGTGC 2083828 Query 80966 ACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT 81025 | | || |||| || || ||||| || | |||||| ||| |||||| || | Sbjct 2083827 AGAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCAT 2083768 Query 81026 CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAA 81085 | |||||| ||||||||| || ||||| || ||| |||| || ||| || | ||| | Sbjct 2083767 CTTTGTAGACCATGTACGGCGTCCCGGTTTCTGTCTGCGACTCGATGATTGCATACCATA 2083708 Query 81086 TCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAG 81142 || | ||||| ||||| ||| | | || || | |||| ||| ||| Sbjct 2083707 GCTGCTGAGCCTTCACCACACGCTT---CACCCTCCCCTCCTTCTCATATCTGGTGTAGA 2083651 Query 81143 CTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 ||| || |||| | || ||| || | ||||| ||| || ||||||| Sbjct 2083650 GTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGCCCGGGGCAGTCGGCCGGACACATCA 2083591 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 || |||||| || |||||| || ||||||||| |||||||||||| |||||| Sbjct 2083590 GGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGT 2083531 Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||||||||| | | ||| |||||| | ||| ||| || ||| || |||| Sbjct 2083530 AGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 2083471 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC----CTTGCGACGG 81378 | | | || ||||| |||||||| |||| ||||| | || ||| | | Sbjct 2083470 CAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTG-TTG 2083412 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 || ||||| | || ||||| || || ||| | || | |||||| |||| || || Sbjct 2083411 CCCCCCTGATCAACATAACGCGCTGTGTTGTTGTAAACCCTCAACATTGGGACGAGCCCG 2083352 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAA 81498 | || ||||| || || |||| |||| ||| | | ||||| || Sbjct 2083351 TTGGAACAGCCGTTGGTGCCGGCGATGTAGCTCCCCGTGGATCTAATGCAGCTGACTGCC 2083292 Query 81499 AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATT 81558 | || || || || | | || || || | || || | || | || || || || Sbjct 2083291 ACGCCAATCCCTCCAGCTGATTTGGAGATGAGGGCGCAATGCTTTAGCGTGTCGTAGATC 2083232 Query 81559 CCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTT 81618 ||||||||||| || | |||||| | |||| ||| ||||| |||| ||| || || || Sbjct 2083231 CCCTCGATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTG 2083172 Query 81619 GAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCA 81678 | || |||||||| || || |||| ||||| |||| | | ||||| ||||| Sbjct 2083171 GTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTG 2083112 Query 81679 TAGGTTTCCTTGAC-GCGTGGAATAT-CGTCACCGTGAATACCGATAGCTACACGCATAA 81736 ||||| || |||| || | | |||| |||| ||||| || || | ||| || | ||| | Sbjct 2083111 TAGGTCTCGATGACTGCTTCG-ATATCCGTC-CCGTGGATTCCCACAGCCACCCTCATGA 2083054 Query 81737 ACATGTACTGGGG 81749 ||||| ||| || Sbjct 2083053 GCATGTGCTGCGG 2083041 >seq3522 Length=4083170 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || ||||| || |||||||| || || |||||||||||| | | Sbjct 3190309 ATGCAGATCTTTGTGAAAACGCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 3190368 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| ||||| ||||||||||| || ||||| || |||||| Sbjct 3190369 GACACCATCGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 3190428 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 3190429 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3190488 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| ||||||| | ||||| Sbjct 3190489 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGG 3190535 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||||||| || || Sbjct 3190537 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 3190596 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| ||||| ||||||||||| || ||||| || |||||| Sbjct 3190597 GACACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 3190656 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 3190657 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCTGACTACAAC 3190716 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| ||||||| | ||||| Sbjct 3190717 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGG 3190763 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||||||| || || Sbjct 3191221 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 3191280 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| ||||| ||||||||||| || ||||| || |||||| Sbjct 3191281 GACACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 3191340 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 3191341 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCTGACTACAAC 3191400 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| ||||||| | ||||| Sbjct 3191401 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGG 3191447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570285056831600