Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3522 95.1 8e-15 >seq3522 Length=4083170 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| | | Sbjct 3190537 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 3190596 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| ||||| ||||| | || || || || Sbjct 3190597 GACACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 3190656 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || || ||||| | ||||| | || |||||| Sbjct 3190657 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCTGACTACAAC 3190716 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 3190717 ATCCAGAAGGAGTCCAC 3190733 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| | | Sbjct 3191221 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 3191280 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| ||||| ||||| | || || || || Sbjct 3191281 GACACAATTGAAAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 3191340 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || || ||||| | ||||| | || |||||| Sbjct 3191341 CAGAGGCTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGCACCCTCTCTGACTACAAC 3191400 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 3191401 ATCCAGAAGGAGTCCAC 3191417 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || |||||||| || || || || ||||||||||| ||||| || Sbjct 3219628 AACATGCAGATCTTTGTGAAAACCCTAACTGGTAAGACCATCACTCTCGAGGTTGAGCCC 3219687 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | ||||| || || || || | || || || Sbjct 3219688 AGTGACACCATTGAGAATGTCAAGGC-CAAAATCCAGGATAAGGAGGGCATTCCCCCCGA 3219746 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| ||||| || |||||||| | ||||| | || || Sbjct 3219747 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 3219806 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 3219807 CAACATCCAGAAGGAGTCCAC 3219827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337994955205940