Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maylandia_20zebra_20[genbank_20GCA_5F000238955.3_202015-10-06] 3,555 sequences; 859,842,118 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3522 134 3e-26 >seq3522 Length=4083170 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| ||||| || || || |||||||| ||||| || || ||| Sbjct 3190312 CAGATCTTTGTGAAAACGCTCACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 3190369 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || || || |||||||| ||||| || || || ||||||| Sbjct 3190370 ACACCATCGAGAACGTGAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGACCAGC 3190429 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 3190430 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 3190489 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || ||||| || | ||||| Sbjct 3190490 TCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAG 3190529 Score = 134 bits (148), Expect = 3e-26 Identities = 163/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||||| ||||| || || ||| Sbjct 3191452 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 3191509 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||| || || || || || || ||||||| Sbjct 3191510 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGC 3191569 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 3191570 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 3191629 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || |||||| || | ||||| Sbjct 3191630 TCCAGAAGGAGTCCACCCTCCACCTTGTTCTGCGTCTCAG 3191669 Score = 125 bits (138), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||||| ||||| || || ||| Sbjct 3190768 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 3190825 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| || || ||||| || || || || || || ||||||| Sbjct 3190826 ACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCCGACCAGC 3190885 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 3190886 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 3190945 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || ||||| || | ||||| Sbjct 3190946 TCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAG 3190985 Score = 125 bits (138), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| || || || |||||||| ||||| || || ||| Sbjct 3190996 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 3191053 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| || || ||||| || || || || || || ||||||| Sbjct 3191054 ACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCCGACCAGC 3191113 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 3191114 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 3191173 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| || || || || || || ||||| || | ||||| Sbjct 3191174 TCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAG 3191213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203676371924670