Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mchenga_20conophoros_20[genbank_20GCA_5F000150855.1_202008-07-09] 61,923 sequences; 73,425,564 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq61591 203 1e-46 >seq61591 Length=3210 Score = 203 bits (224), Expect = 1e-46 Identities = 462/691 (67%), Gaps = 8/691 (1%) Strand=Plus/Minus Query 349535 GAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGT 349594 || |||||||| || ||||| | |||||||||||||| || ||||| || || | || Sbjct 3200 GAGGAAATTTCCTCCATGGTCCTGGTTAAAATGAAGGAGATAGCTGAGGCCTACCTGGGA 3141 Query 349595 GAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCT 349654 ||| || | | || || || || || ||||| ||||| || || ||||| | Sbjct 3140 CAAAGGGTGTCAAACGCAGTCATCACAGTGCCAGCTTATTTCAACGACTCCCAGAGACAA 3081 Query 349655 GCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCC 349714 || || || |||||||| || | || |||||||||| || || |||||||| ||| Sbjct 3080 GCTACCAAGGATGCTGGGGTGATCTCTGGACTAAATGTTCTGAGGATCATTAATGAGCCC 3021 Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCA--AGaaaaaaaTATTC 349772 || || ||||| ||||||||||| || |||||| | | || |||| ||| | | Sbjct 3020 ACAGCAGCAGCCATTGCATATGGCCTGGATAAA--GGCAAAACAGGAGAACGCAATGTGC 2963 Query 349773 TTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAA 349832 | || |||||| | || || || || |||||||| || | || || |||||| || | Sbjct 2962 TGATCTTTGATCTTGGCGGAGGCACCTTTGATGTGTCTATTCTGACCATTGAAGCTGGCA 2903 Query 349833 TTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATC 349892 | ||||| || ||||| ||| | || || ||||| |||||||| || || ||||| || | Sbjct 2902 TCTTTGAGGTCAAAGCCACTTCAGGAGACACACACCTTGGTGGGGAGGACTTTGACAACC 2843 Query 349893 GTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATA 349952 | || ||| ||||| | |||||||| | || ||| | || ||| | | | Sbjct 2842 AAATGGTCAAGCACTTTGTAGAGGAATTTAAAAGAAAACATAAGAAGGACATTAGCCAGA 2783 Query 349953 ATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCAT 350012 || |||||| || | | | | || || ||||| | || ||| | ||||||| | Sbjct 2782 ATAAGAGAGCAGTGAGGAGATTGCGTACAGCTTGTGAGAGGGCAAAGAGGACCTTATCCT 2723 Query 350013 CTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCAT 350072 | | || || | ||||| || || ||||| ||| || | ||||| | | | Sbjct 2722 CCAGCACTCAGGCAAGCATTGAGATCGACTCTCTCTTTGAGGGAATTGATTTTTACACCT 2663 Query 350073 CTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATC 350132 | || ||| | || || ||||| || | |||||||| || | |||| | | | Sbjct 2662 CCATCACAAGGGCACGTTTTGAGGAGCTCAACTCAGATCTTTTCAGGGGAACACTTGGCC 2603 Query 350133 CTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATC--AGATTGATGAAGTAGT 350190 | || || |||| | | ||||| || || | ||||| |||| ||||| | || Sbjct 2602 CAGTTGAGAAAGCCCTGCAGGATGCCAAGCTG--GATAAATCCAGGATTCATGAAATTGT 2545 Query 350191 TTTAGTTGGTGGTTCTACACGTATTCCAAAA 350221 | |||||||| || ||| | ||||| ||| Sbjct 2544 CCTGGTTGGTGGCTCCACAAGAATTCCCAAA 2514 Score = 91.5 bits (100), Expect = 4e-13 Identities = 355/549 (65%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 183246 ATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGAT 183305 || || ||||| || || || || || || || || || |||||||| || | | | | Sbjct 2413 ATGGCTGCTTGGACGGCGGCGCCGTAAGCCACGGCCTCGTCTGGGTTGAT-GCTCTTGTT 2471 Query 183306 AAT-TCTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGA 183364 | || ||| || || || || |||| | || ||||| |||||||| || || Sbjct 2472 CAGCTCCCGGCCGTTGAAGAAGTCCTGCAGCAGCTTCTGGATTTTGGGAATTCTTGTGGA 2531 Query 183365 ACCACCGACTAATACTACTTCATCGATATTACTTTTA-CTAATTTGTGAATCTTTTAAAA 183423 ||||| || | || | ||||| || | |||| | | ||| | ||| | | Sbjct 2532 GCCACCAACCAGGACAATTTCATGAATCCTGGATTTATCCAGCTTG-GCATCCTGCAGGG 2590 Query 183424 CTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTG 183483 |||| ||||| ||| | | ||| || || | |||| | ||| || || | || Sbjct 2591 CTTTCTCAACTGGGCCAAGTGTTCCCCTGAAAAGATCTGAGTTGAGCTCCTCAAAACGTG 2650 Query 183484 CTCTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATG 183543 | || || | || | |||| ||||| || | | | | || || || ||||| || Sbjct 2651 CCCTTGTGATGGAGGTGTAAAAATCAATTCCCTCAAAGAGAGAGTCGATCTCAATGCTTG 2710 Query 183544 TTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTA 183603 || || || ||||| || || || || | ||||| ||||| | | || | | Sbjct 2711 CCTGAGTGCTGGAGGATAAGGTCCTCTTTGCCCTCTCACAAGCTGTACGCAATCTCCTCA 2770 Query 183604 ATGATCTTGGATTATCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAAT 183663 || ||| ||| | |||| || | |||||||||||||||||||| | ||| | Sbjct 2771 CTGCTCTCTTATTCTGGCTAATGTCCTTCTTATGTTTTCTTTTAAATTCCTCTACAAAGT 2830 Query 183664 G-TTGAAGTAATCTTG-TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGC 183721 | |||| || | | | ||||| || || ||||| | ||||| || || | ||| || Sbjct 2831 GCTTGA--CCATTTGGTTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCTCCTGAAGTGGC 2888 Query 183722 TTTAACTTCAAATATTCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACC 183781 ||| || ||||| || || ||||||| | | ||| || |||||||| || || || || Sbjct 2889 TTTGACCTCAAAGATGCCAGCTTCAATGGTCAGAATAGACACATCAAAGGTGCCTCCGCC 2948 Query 183782 CAAATCAAA 183790 | |||||| Sbjct 2949 AAGATCAAA 2957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514052214679169