Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melanochromis_20auratus_20[genbank_20GCA_5F000150895.1_202008-07-09] 63,297 sequences; 68,238,634 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10121 141 1e-29 seq16161 91.5 2e-14 >seq10121 Length=1041 Score = 141 bits (156), Expect = 1e-29 Identities = 177/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || |||||||||| || ||||| || || || || Sbjct 865 CGCAAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCTGGGCATCACTAAACCGGCCAT 806 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| |||| ||||| |||||| |||| || || |||| || |||| Sbjct 805 CCGCCGTCTGGCTCGCCGTGNCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 746 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || || ||| || |||| || || || ||| || || Sbjct 745 CCGCGGTGTGCTCAAGGTGTTTCTGGAGAATGTCATCCGCGACGCCGTCACCTACACTGA 686 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 685 GCACGCTAAGAGGAAGACTGTGACCGCCATGGATGTAGTGTACGCTCTGAAGAGGCAGGG 626 Query 16672 CCG 16674 ||| Sbjct 625 CCG 623 >seq16161 Length=3477 Score = 91.5 bits (100), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 16514 GGAGTCAAGC-GTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| |||| || |||| || || |||| || |||| || | || ||||| | || Sbjct 61 GGAGTGAAGCTGTATCTCCGGTCTGATCTACGAGGAGACCCGCGGAGTGCTGAAGGTGTT 120 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| ||| |||| ||||||| | ||| || ||||||||||| | |||||||| Sbjct 121 TTTGGAGAACGTCATCCGTGATGCTGTTACCTACACGGAGCACGCTAAGAGGAAGACTGT 180 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | || ||||| |||| | || ||||| | | || || ||||| Sbjct 181 GACCGCCATGGATGTGGTGTATGCTCTGAAGAGGCAGGGCCGCACTCTGTACGGCTTTGG 240 Query 16693 AAGTTAATCT 16702 ||||| || Sbjct 241 CGGTTAAACT 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79017327109821