Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq2742 138 2e-28 >seq2742 Length=6849 Score = 138 bits (152), Expect = 2e-28 Identities = 591/918 (64%), Gaps = 31/918 (3%) Strand=Plus/Minus Query 2273 CACCAACTGGAACACGCCGAGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCT 2332 ||||| | |||||| ||| |||| |||||| ||| |||||||||| | |||| | Sbjct 2118 CACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATGTGCTGGACGTT 2059 Query 2333 GTATTTCTCGGTCAGTTTGCGGATGCCATCTGCCTGC-GCGGCAAAGTCCATGCCCTTCC 2391 | | |||| ||| || ||| | |||||| ||| || | | | ||| || Sbjct 2058 GAAGCGCTCGCACAGCTTCTCGATCTGCTTTGCCTGATGCGTGAACGACG-TCCCCCGCC 2000 Query 2392 ACTGGTGGCGCTCCAGCATGCGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGA 2451 | ||| |||||| || ||||||||||| || | ||| ||||| || | || | Sbjct 1999 AGCTGTGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAA 1940 Query 2452 CGCACCCGGCGCTGTCGCCAGTGTGTGAC--GGGTCGTAGCCAATCCAGACGGGGCGAGA 2509 ||||| ||| ||||| | || ||| ||||| || || | |||||| ||||| Sbjct 1939 CGCACGTCGCGTCGTCGC--GGGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTT 1882 Query 2510 GCCGAACGGATGGTCGGCGAACGGGGCGAAGTCCTCCCATTCTTCCATCACGTCGACCAT 2569 | ||||||| | | | |||| || |||| |||| ||| || || | Sbjct 1881 GTCGAACGGCCGCGGGCTGTCCGGGTCGTAGTCAGTCCATAGGCCCAAGTCG--GAATA- 1825 Query 2570 GCAGCGCTGCAGCTCCTCGAACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACAT 2629 |||||||| ||| || || | |||| | | | | ||||| |||| |||||| Sbjct 1824 GCAGCGCTCCAGGTCGGTCAAGGCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACAT 1765 Query 2630 AAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTTTGAGTTGGTCGAGGTCGAACAG 2689 ||||| | || ||| ||| || || || | | || | || ||||||||||| Sbjct 1764 GAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAG 1705 Query 2690 GGTGCAGCCACCGGCAAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGTC 2749 | ||||||| ||||| | |||||| | ||| |||| | || |||||||| || || Sbjct 1704 GTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGG 1645 Query 2750 GCAGAGCTGGCCACCGGCGAGC-GCGCGGTGACTGATGTCAATTTCGATGCGGTCGGCAA 2808 ||| | | ||| | || | |||| | ||| | || || ||| | | Sbjct 1644 GCACAACGCGCCGGCATGGATCTGCGCTTCG-CTGG-GCCA----CGGCCCGGCCTTCTT 1591 Query 2809 TACG-GCTGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCC 2867 | || ||| | ||| |||| |||||| | |||| | ||||| || ||||| Sbjct 1590 TCCGCGCTTG--CTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTT 1533 Query 2868 AGCGTTGAGGGTGTCGAAAAGTAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGAG 2927 | || ||| || || |||||||| |||| | ||||||||||| | | Sbjct 1532 ACCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCATCGCGCTG 1473 Query 2928 GCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCG 2987 || || | |||||||||| ||||| ||||||||||| | ||| |||| || | || | Sbjct 1472 GCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGG 1413 Query 2988 CCGTTATGGCTCTGAGCCGTGTTGGAGTTGGTACCGAGAAAAATCAGCTTTGC------- 3040 |||| | |||||| ||||||||| ||| || |||||| ||| | || Sbjct 1412 CCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGC 1353 Query 3041 --GCCGTTGTTGCCAATGACAATCGGGTCGCCGGTCAGGTCGACGTC-AACCAGT-CGC- 3095 ||||| |||| | || || || | ||||| ||| |||| || ||||| | ||| Sbjct 1352 TTGCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGCG 1293 Query 3096 GCAAACTGTATGATGTATTCGCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAA 3155 || ||| | |||||| ||||||||| | | ||| | || || ||||| ||| Sbjct 1292 GCGAACGCGACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGAAA 1233 Query 3156 ATCTGGTTATGGCCGGTC 3173 |||||||| | |||||| Sbjct 1232 ATCTGGTTGTCCCCGGTC 1215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97867884685208