Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq67 515 5e-141 seq30 93.3 5e-14 >seq67 Length=1635559 Score = 515 bits (570), Expect = 5e-141 Identities = 1293/1949 (66%), Gaps = 33/1949 (2%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || ||||| | ||||| || | || | || ||||| ||||| Sbjct 33427 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGATTC 33368 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| |||||||| | || || || ||||| || || ||||| || | ||| Sbjct 33367 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 33308 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | |||||| || || |||| || || || || || || || ||||| || |||| || | Sbjct 33307 ATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAGGCCGTGGGCATCGGGGCCAGCAGT 33248 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 53324 | || || || | |||| | | ||| || || || || || |||| | ||||| | Sbjct 33247 AGGCTGTTCCTCACGCCGTGTTTGGCGATCTTTTCCTTCAGCAGCTTCC--AGTCCAACA 33190 Query 53325 GATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGA 53382 |||| | || | | | || || || || || ||| | || Sbjct 33189 GATCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATCCCCTTGCTGACCGGAGA 33132 Query 53383 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 53442 ||| | || || ||||| || || || | || || || || |||||||| | || Sbjct 33131 GCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGC 33072 Query 53443 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 53502 |||| || ||||| || ||||| | | || || || || || |||| ||||| Sbjct 33071 GGCGTAGTAGATGGTCTCAAAGATTTGGATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAA 33012 Query 53503 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 53562 || ||| | || || || || || || || |||||||| || || || || || || Sbjct 33011 CGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCGATTCCTATTGGCCT 32952 Query 53563 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 53622 || | ||| || || | || ||||| || | ||||| | ||||| || || || || Sbjct 32951 GTGACGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCTCGATGATCTT 32892 Query 53623 ATTGAGGTTTCTGACAATTACTTTGACCAC--ATCCTTCAGTTTGAGAAAATCAAATTGT 53680 || | |||||||||||| |||||| ||| || || ||||| ||| ||||| || Sbjct 32891 GTTCAAGTTTCTGACAATGACTTTGGTCACAGATGCT--AGTTTTTTAAAGTCAAA-AGT 32835 Query 53681 C----CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTC 53736 | || | || ||||||| | ||||| || ||||||||||| || |||||||| Sbjct 32834 CCGCTCAGGGGTGACGTACATGTTGAGCGCAATGGAGGCCAGATTACAGACCGCTACCTC 32775 Query 53737 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 53796 || | | |||| | || || ||||| || || || | ||||| || || | Sbjct 32774 ATCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAG 32715 Query 53797 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGT 53856 ||| || || || |||||| ||| || || || || || || ||| | |||||||| || Sbjct 32714 ATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGT 32655 Query 53857 TTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTA 53916 ||| ||||||| || || || || | ||| || ||||||| | | | ||| Sbjct 32654 TTCTGTCTGGGACTCAATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGCTTGAC 32595 Query 53917 TCTCTTTTCTCTTTCGTAT--AGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTG 53974 ||| || | || ||| |||||| | || |||||||| || |||||| | | Sbjct 32594 CCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTC--TCAAACTCCTCACCCCAACACTCG 32537 Query 53975 TCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT--CACTC 54032 |||| || ||||| |||| |||||||||| ||||| ||| || | ||| ||||| Sbjct 32536 TCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGT--TGCTTTCCACTC 32479 Query 54033 GTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCC 54091 ||||| || | ||||| ||||| || || || ||| || ||||||| || || ||| Sbjct 32478 TCTTCATGAACAAGTCAGGGATCCACAGGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCC 32420 Query 54092 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 54151 || |||||||| ||||| || || || ||||| | | | ||| | |||||||| ||| Sbjct 32419 TCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCACGGCTCC 32360 Query 54152 AAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 54211 | ||| |||| | |||| || | |||||| || ||||| || | || | || ||| Sbjct 32359 AGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGCGCCGTG 32300 Query 54212 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 54271 || || |||||||||| ||| || | | || || || || || || |||| || Sbjct 32299 TTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCAATG 32240 Query 54272 TAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAG 54331 ||||| || | | | || || | | | ||| || || || ||| || ||| Sbjct 32239 TAGCTCCCTGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCAGCCGACTTTGAG 32180 Query 54332 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 54391 || | || || | || | || || |||||||| || || || || ||| ||||| Sbjct 32179 ATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCG 32120 Query 54392 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 54451 || || || ||||| |||| || | | | || || ||||| || | ||||| || Sbjct 32119 AGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAG 32060 Query 54452 GCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC 54511 ||||| || ||||| || || || || || ||||| ||||| || |||| ||| || ||| Sbjct 32059 GCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCC 32000 Query 54512 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 54571 | || || || || | || | ||| | ||||||||| |||| ||| | | ||| Sbjct 31999 GTTCTGTGGATGCCAACAGAAACCCTCATGAGCATGTGCTGGGGTCGTTCGGCCACTTTG 31940 Query 54572 TTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 54631 ||| || ||||||| |||||| |||| ||| || || ||||| ||||||| || Sbjct 31939 CCGTTGATCTTCAGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAG 31880 Query 54632 AAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC 54691 ||||| || ||| |||| || | |||||||| || || | | | || | || Sbjct 31879 AAGTCACGGTCGAAAATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCCTGGACAATGTCG 31820 Query 54692 ATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTGACATAGTTA 54748 | || | ||| || || || ||||| || | | || | || ||||||||||| Sbjct 31819 AGCGT-CTCCTTGGAGATCATGGGAGA--GTGGCGTTTGTTCAAGGGGTTGACATAGTTG 31763 Query 54749 AATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACG 54808 | | |||| |||||| || || || | || || || |||||||| || ||||| ||| Sbjct 31762 TACAGGTCCTCCATCACGTCGCTGAACACCTTCTTGGTCTCTTTGTGCAGGTTTGAGACG 31703 Query 54809 GCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATT 54868 || || | ||| || || || ||||| || || |||| || || |||||| || || Sbjct 31702 GCGATCCGAGCAGCGAGGATTGCATAGTCGGGGTGTTTGGTTGTGAGAGTGGCGGCGATC 31643 Query 54869 TCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACC 54928 || || | ||| ||||| | || || || || || || | || | || || || ||| Sbjct 31642 TCAGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGAATCACC 31583 Query 54929 TTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTA 54988 ||||| | || | ||||| | | |||| ||| | || || || | || Sbjct 31582 TTCATCGTAATCTGGGCTGGATCCACAAAGTCAGAGTTCAGCCCGTAGCACAGCTTCTGG 31523 Query 54989 ATACGAGATGTGATTTTATCAAACATGAC 55017 || || || ||||||||||| |||||||| Sbjct 31522 ATGCGGGAGGTGATTTTATCGAACATGAC 31494 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 33720 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCAATGTGGATGT 33661 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 33660 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCACGGTCGGCTGCCATCTTGAGCACGGTCT 33601 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 33600 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 33552 >seq30 Length=3550406 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || || |||||||| || || || ||||| |||| || || || | Sbjct 771459 CACTGAACACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCAGCGAGGA 771400 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 || || || ||||||| || || |||||| || | || |||| ||||||||||| Sbjct 771399 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 771340 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || ||||| || |||||| | || | || ||||| || ||||| Sbjct 771339 GCTCCACCGTGGTGACTCCACTGTACAGACCCTGGATCACTTTCAT 771294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593674888953120