Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq331 154 2e-32 seq508 84.2 2e-11 >seq331 Length=323222 Score = 154 bits (170), Expect = 2e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| ||||| ||||||||| | || ||||| | Sbjct 7932 AAACATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGCC 7873 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || |||| | | | |||| |||||| || || | || || || ||||| ||| | | Sbjct 7872 CAGTGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCG 7814 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || ||||| |||||||| || | ||||||||| ||||| Sbjct 7813 ACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACT 7754 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||||| |||| || || || || |||| |||||||||| Sbjct 7753 ACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGCGG 7702 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 7700 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 7641 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | || || || ||||| ||| | ||||| Sbjct 7640 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCA 7582 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||| || Sbjct 7581 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTATAA 7522 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || || |||| |||||||||| Sbjct 7521 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGCGG 7474 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40708 ACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTC 40767 || || || ||||| ||||||||| | || || || | | |||| | | | || Sbjct 11485 ACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAGTGACACTATTGAGAATGTC 11426 Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| || || | || || || ||||| ||| | |||||||| | || |||| || Sbjct 11425 AAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCC 11366 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| || ||||| || | ||||||||| ||||||||| |||||||||||| |||| Sbjct 11365 GGCAAGCAACTGGAAGATGGCCGCACCCTCTCCGACTACAATATCCAGAAGGAGTCCACC 11306 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || |||| |||||||||| Sbjct 11305 CTCCACCTTGTCCTGCGTCTGAGGGGCGG 11277 >seq508 Length=211378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 ||||| ||||| || || ||||| ||||||| || ||| ||||| ||||| | |||| Sbjct 169512 GTGGCTTTCGCAGCAGTGGAGGGTATCTTCTTCTCAGGCTCATTCGCTGCCATCTATTGG 169571 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| | || || ||||| || || || ||| ||| ||||| || |||||| Sbjct 169572 CTCAAGAAGAGAGGGCTAATGCCTGGTCTTACCTTCTCCAATGAGCTGATTAGCAGGGAT 169631 Query 117164 GAGG 117167 |||| Sbjct 169632 GAGG 169635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515178665129440