Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq67 132 4e-26 seq331 91.5 1e-13 >seq67 Length=1635559 Score = 132 bits (146), Expect = 4e-26 Identities = 451/689 (65%), Gaps = 24/689 (3%) Strand=Plus/Minus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| | | ||||| ||| ||||||||||| || ||||| || || | ||||||||||| Sbjct 33319 GTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAGGCCGTGGGCATC 33260 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 |||| || | ||| || ||||||| ||| || || || || ||| Sbjct 33259 GGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTTTCCTTCAGCAGCTTC 33200 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||||| |||||| | ||| || | ||||| | | | || || | || Sbjct 33199 CAGTCCAACAGATCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT---ACTGG 33155 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | || ||| |||| |||||| | | ||||| || ||||| ||| |||| Sbjct 33154 AGGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCC 33095 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAATAGTTGAC 133573 ||||||||||| ||||||| ||||| |||| ||||| || |||| | || ||| | Sbjct 33094 AGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGAT-GTTCA- 33037 Query 133574 GAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAA 133631 | | ||| || ||| ||| || | | | | || | || | || || || |||||| Sbjct 33036 GCAGCTGCGCCTCGGGGCTTTCAAACGGG-TAACGCATCAGGATGAAGGCATCCGCCAAA 32978 Query 133632 CCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTG 133691 || || | ||||| || || || | || || ||| | |||||| |||| | Sbjct 32977 CCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTCGGGCACT 32918 Query 133692 GGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGT 133751 |||||| ||| | |||||||||||||| | || | ||| || | ||| |||| | | Sbjct 32917 GGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGACTTTGGTCACAGAT 32858 Query 133752 TTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATA 133811 || | ||||||| ||| || | || |||| || |||||| ||||| Sbjct 32857 GCTAGTTTTTTAAAGTCAAAAGTCC--GCTCAGGGGT-GACGTACATGTTGAGCGCAATG 32801 Query 133812 CTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAG 133871 ||| |||||||| || || ||| | ||| | || | ||||| || | |||| Sbjct 32800 GAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTGTGCAG 32741 Query 133872 AGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCC 133931 |||||||||| |||||| ||||||| ||| | || ||||| ||||| || Sbjct 32740 AGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCT 32681 Query 133932 TTGTATAGCATGTACGGCCCGCCGGTTTC 133960 ||||| |||||||||||| |||||||| Sbjct 32680 TTGTACAGCATGTACGGCGTACCGGTTTC 32652 >seq331 Length=323222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634 ||||| ||| || ||||| || || || |||| || | |||||| || || || ||| Sbjct 12944 GTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATG 13003 Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694 || |||||||| |||||| || || | || | |||||| || ||||||||| Sbjct 13004 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTGTCGCTGGGCTCGACCTCA 13063 Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | ||| | || ||||| || || || || ||||||||||||||| Sbjct 13064 AGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 13108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433797121683448