Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq331 100 3e-16 seq1541 98.7 1e-15 seq822 98.7 1e-15 seq4 96.9 4e-15 seq8 91.5 2e-13 seq1144 89.7 6e-13 seq278 89.7 6e-13 >seq331 Length=323222 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 ||||| || || || | ||||| || | || | ||| |||||| || || || || Sbjct 7468 TATTGACCGCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAG 7527 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | || || || | || || |||||||| ||||| || || || | |||||||||| Sbjct 7528 TCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCG 7587 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 | || | || ||||| ||| ||| || |||| || | | |||||||| | Sbjct 7588 GGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGC 7647 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || | |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 7648 TCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 7700 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || | || || |||||||| || || || Sbjct 7737 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 7796 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||||| || | || ||||| ||| ||| || |||| | Sbjct 7797 GATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 7856 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || | || || || | |||||||| ||||| || || ||||| || Sbjct 7857 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 7916 Query 43172 AAAGATTTGCATTTTT 43187 |||||| ||||| ||| Sbjct 7917 AAAGATCTGCATGTTT 7932 >seq1541 Length=45169 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26449 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26508 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 26509 TACTAACGAGGA 26520 >seq822 Length=122784 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 68735 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 68676 Query 60126 TACTACCGAGGATTGAATA 60144 ||||| |||||| ||| || Sbjct 68675 TACTAACGAGGAGTGAGTA 68657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 67752 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 67693 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 67692 TACTAACGAGGAGTG 67678 >seq4 Length=8983680 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 4200099 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4200158 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4200159 ATACTAACGAGGA 4200171 >seq8 Length=7070605 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 4670 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 4611 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 4610 TACTAACGAGGAT 4598 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 5057 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 4998 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 4997 TACTAACGAGGAT 4985 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 5444 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 5385 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 5384 TACTAACGAGGAT 5372 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 5831 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 5772 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 5771 TACTAACGAGGAT 5759 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 6218 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 6159 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 6158 TACTAACGAGGAT 6146 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 6605 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 6546 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 6545 TACTAACGAGGAT 6533 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 6992 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 6933 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 6932 TACTAACGAGGAT 6920 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7379 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 7320 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 7319 TACTAACGAGGAT 7307 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7766 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 7707 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 7706 TACTAACGAGGAT 7694 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 8153 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 8094 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 8093 TACTAACGAGGAT 8081 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 8540 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 8481 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 8480 TACTAACGAGGAT 8468 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 8927 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 8868 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 8867 TACTAACGAGGAT 8855 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 9314 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 9255 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 9254 TACTAACGAGGAT 9242 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 9701 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 9642 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 9641 TACTAACGAGGAT 9629 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 10088 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 10029 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 10028 TACTAACGAGGAT 10016 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 10475 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 10416 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 10415 TACTAACGAGGAT 10403 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 10862 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 10803 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 10802 TACTAACGAGGAT 10790 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 11249 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 11190 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 11189 TACTAACGAGGAT 11177 >seq1144 Length=77086 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 6429 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 6370 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 6369 TACTAACGAGGA 6358 >seq278 Length=378024 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 316360 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 316301 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 316300 TACTAACGAGGA 316289 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 316565 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 316506 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 316505 TACTAACGAGGA 316494 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 316770 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 316711 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 316710 TACTAACGAGGA 316699 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 317612 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 317553 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 317552 TACTAACGAGGA 317541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571772612250320