Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq52 279 4e-70 seq37 109 4e-19 >seq52 Length=2291593 Score = 279 bits (308), Expect = 4e-70 Identities = 617/912 (68%), Gaps = 30/912 (3%) Strand=Plus/Plus Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||| ||||| || || ||| |||| ||| |||||| |||||||| ||||||||||| Sbjct 381510 TTCATTACAGTGCCT-CTCAGTGAAGAGGAGAGAGACTTTCCCATTGCTTACTCGATGGT 381568 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | |||||||||||||| | ||||| || || || ||||| | ||||| |||||||| Sbjct 381569 AATTCATGAGAAGATTGAGATGTTTGAGCGACTTCTACGAGCTATTTATGCTCCTCAGAA 381628 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||| |||||||| || ||||| ||| ||| |||| | || | || || ||| Sbjct 381629 CATCTACTGTGTGCATGTGGACAGGAAATCCTCAGAAAAATTTAGGATAGCAGTGGAGGA 381688 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 ||||| |||||||| || ||||| || || ||||| | || | ||||| ||||| Sbjct 381689 AATTATCTCCTGCTTTCCTAATGTGTTTATAGCCAGCAGATTAGAAAGAGTGGTATATGC 381748 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-- 107972 || ||||| | ||||| || || | ||||| |||||||| |||| ||||||| Sbjct 381749 TTCATGGTCTCGGGTGCAGGCAGATTTAAACTGCATGGAAGATCTGCT---GAGCTCACA 381805 Query 107973 -GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGC 108031 | | |||| |||| | || || || || ||||||||||||||||| || ||||| Sbjct 381806 CATCCAGTGGAGGTACCTGCTTAACACCTGTGGGACAGACTTCCCCATCAAAACCAACAG 381865 Query 108032 CGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACC 108091 |||||||| | ||| || | | | |||| | ||||| |||||| ||||||| | Sbjct 381866 AGAGATGGTTCAGGCGCTGACGGCCCTCCAGGGGAGAAACAGCATGGAGACTGAGGTCAC 381925 Query 108092 TTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCC 108151 | | ||||||| || ||| | || | || | || || |||| | | | Sbjct 381926 AAGTAACCACAAAAAAGGCCGTTGGCAGTATCATTACAATGTCACTGACAGAATCACCTG 381985 Query 108152 TACCA--GCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCC 108209 || | | ||| ||| ||| ||| | || | | |||||||| |||| ||||| Sbjct 381986 GACAAATGTAAGGAAAAGTCCCCCACCCAT--TAGTGTTCCCATGTTTTCAGGAAATGCT 382043 Query 108210 TATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGA 108269 || ||||| | ||| | || ||||| ||||||| | || || | | || | | Sbjct 382044 TACTTTGTTGTCTCAAGGGCTTTTGTGAAACATGTGATGGAGGACAGTGAGGTTCAGAAA 382103 Query 108270 CTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAG 108329 || | || |||| |||||||| || ||||| || || ||| | |||||||| || ||| Sbjct 382104 CTTCTGGAGTGGGAGAAAGACACGTACAGCCCTGATGAGCACTTGTGGGCCACTCTACAG 382163 Query 108330 CG--TG--CTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGA 108385 | || ||||| | || || || || |||| ||| |||||| | ||||| Sbjct 382164 AGGATGCCCTCCG----TTCCCGGATCAGTGCCTACACACATCAAGTACGATGAGTCAGA 382219 Query 108386 CATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGG 108445 ||||| |||||| || | | || |||||| || |||||||| || | || Sbjct 382220 CATGAATGCCATTGCTCGTGTGGTGAAGTGGGGTGGTTTAGACGGAGATGTGAGAAATGG 382279 Query 108446 GGCGCCTTATGCACCCTGCTCTG--GAATCCATCGGAGGGCCATCTGCATTTACGGGGCC 108503 ||| |||| | || ||| ||| || | || | || | | || ||||||| ||| Sbjct 382280 GGCTGCTTACGATCCTTGCACTGGTGATTACA--GAAGAGGAGTTTGTGTTTACGGAGCC 382337 Query 108504 GGGGACCTGTACTGGATTCTCCAGA-AC--CATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || ||||| | ||| ||| || || | || ||||| ||||| |||||||| || Sbjct 382338 GGTGACCTCCAGTGG---CTCATGAGACGACGCCAACTCTTTGCAAATAAGTTTGATCCT 382394 Query 108561 AGGGTGGATGAT 108572 ||| |||||| Sbjct 382395 GAGGTTGATGAT 382406 >seq37 Length=2858176 Score = 109 bits (120), Expect = 4e-19 Identities = 178/251 (71%), Gaps = 18/251 (7%) Strand=Plus/Minus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||||||||| |||||||||||| | || || ||||| || || || ||| |||| ||| Sbjct 1850988 AACTTTGAACGACTGCTGCGAGCCATCTACGCACCTCAAAATATTTATTGTATCCATGTG 1850929 Query 107814 GATGTGAAGTCCCCAGAGA-CT-----TTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || | ||||| || |||| | | || ||||||||| |||||| Sbjct 1850928 GACAAAAAAAC---AGAGATCTCAGTCTTCACTG---CCATCCAGGCCATTACTTCCTGT 1850875 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||||| ||||| ||||||| ||| ||| || |||||| ||||| |||||| | Sbjct 1850874 TTCCCAAATGTGTTCATGGTCAGCAAGGCTGTGAAGGTGGTGTATGCTCACTGGTCACGC 1850815 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC-TCAGTGCC--ATGGAAG 107984 || || |||||||| |||||||||| || ||| | | | | || | ||||||| Sbjct 1850814 GTCCAGGCTGACCTCAACTGTATGGCTGAT---CTCTATAACATTAGCACAGAATGGAAG 1850758 Query 107985 TACTTACTGAA 107995 |||||| |||| Sbjct 1850757 TACTTAATGAA 1850747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348242084953356