Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17]
6,294 sequences; 619,300,777 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq67 553 1e-152
seq30 125 6e-24
seq331 100 3e-16
>seq67
Length=1635559
Score = 553 bits (612), Expect = 1e-152
Identities = 1089/1605 (68%), Gaps = 25/1605 (2%)
Strand=Plus/Minus
Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425
||| | ||| ||||| ||| |||| | || || ||| |||||||||| || |
Sbjct 33458 CTGAATGGATCCGTTGTTGCCAATGAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCCT 33399
Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485
| |||| ||||||| ||||||| | ||||| | |||||||| || || | ||| |
Sbjct 33398 CTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCCT 33339
Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545
||| ||| |||||| ||| | | ||||| ||| || ||||| ||||| ||||| ||
Sbjct 33338 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGC 33279
Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605
|| || || || |||||||| |||| |||||| ||| |||| |||||| || | ||
Sbjct 33278 TGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGAT 33219
Query 22606 TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665
|| ||| |||| | ||||||| ||||||||| |||||| || |||||||| ||
Sbjct 33218 CTTTTCCTTCAGCAGCTTCCAGTCCAACAGATCGGTGGGCGTC---TTCTCCCACATGTC 33162
Query 22666 GTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATAT 22725
||| || | | || || |||| |||||||||||| ||||| || || | |
Sbjct 33161 GTACTGGAGGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCG-AGCT 33103
Query 22726 C-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784
| ||||| || |||||||||||||||| ||| |||| || || ||||| |||||||
Sbjct 33102 CAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGA 33043
Query 22785 TGTTCAATTCGGCGGCGGC--GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTC 22842
|||||| | || ||| | | |||||| |||| |||||||| | ||| || ||
Sbjct 33042 TGTTCAG--CAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATC 32985
Query 22843 CGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTC 22902
||||| ||| |||||||| || || || || | || | || ||| | || ||
Sbjct 32984 CGCCAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTC 32925
Query 22903 GGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAAT---TTT 22959
||||| ||||| | || ||||| | |||||||||||||| ||||| |||
Sbjct 32924 GGGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTG---ACAATGACTTT 32868
Query 22960 CGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTG 23017
|| | | |||||| ||| | ||| | | || || |||||
Sbjct 32867 GGTCACAGATGCTAGTTTTTTAAAGTC--AAAAGTCCGCTCAGGGGTGACGTACATGTTG 32810
Query 23018 ACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATT 23077
| || || ||||| ||||| || || || ||||| || | | ||||| || || |||
Sbjct 32809 AGCGCAATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATT 32750
Query 23078 TCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTG 23137
|| || || || ||||| | || || ||||||| ||| ||||||||| ||||| |||
Sbjct 32749 TCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTG 32690
Query 23138 CACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCT 23197
|| | || ||||| |||||||||||||| || || || ||| ||||| ||||| ||
Sbjct 32689 CAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCG 32630
Query 23198 CGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGG 23257
|||||| |||||| | || ||| | ||| || || | ||| || |
Sbjct 32629 TGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTG 32570
Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317
|| | | ||||| || |||| |||| ||| |||| ||||| | | | ||||||
Sbjct 32569 TAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACAC 32510
Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377
|| ||| ||| | || |||| || | |||| || | || || ||||| ||
Sbjct 32509 ATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGG 32450
Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437
|||||||| || || | ||| | | |||||| || || |||||||| |||| ||||
Sbjct 32449 GCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 32390
Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497
||||| ||||| || ||||||||||| ||||| | ||| || || || ||||| ||
Sbjct 32389 AAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTG 32330
Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557
||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| || || |
Sbjct 32329 TTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAAC 32270
Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGA 23614
||||| || |||| | ||| || | ||| ||| ||| || | | |
Sbjct 32269 CCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTC---CCTGTTGATCTGATGCAGCTG 32213
Query 23615 ACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCG 23674
|| | ||| || ||||| |||| || || || | || || || ||||||||||||
Sbjct 32212 ACAGCCACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCG 32153
Query 23675 TAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCT 23734
|||||||| ||||||||||| || || | |||| || ||| || |||| || |
Sbjct 32152 TAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGC 32093
Query 23735 TTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATT 23794
|| ||| |||| ||| || || || |||||| || || | | |||||
Sbjct 32092 CTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGC 32033
Query 23795 AGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGC 23854
|| ||||| || || ||||| || || |||||| || ||| || || | | || | |
Sbjct 32032 AGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTC 31973
Query 23855 ATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGT 23914
|| | ||||| || |||| ||| || |||||| || || | ||| || || ||
Sbjct 31972 ATGAGCATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGC 31913
Query 23915 TGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCG 23959
| || || || || ||||| ||| ||| |||||||| |||
Sbjct 31912 TCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCACGGTCG 31868
>seq30
Length=3550406
Score = 125 bits (138), Expect = 6e-24
Identities = 122/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
|||||||||||| |||||||||||| || || || || || ||||| | || || |||
Sbjct 773368 ACCTCGTCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTG 773309
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||||||||| || | |||||| | ||||||||| ||||||||||| ||
Sbjct 773308 CCCAGGTTCTGCTGGTTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTT 773249
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
||||| || ||| ||||||||||| || |||||
Sbjct 773248 CCCGTTTCCGTCTGAGACTCGATGATGGCGTACCACA 773212
Score = 120 bits (132), Expect = 3e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
|||| || || ||||||| || || || ||||| | ||| |||||| || | ||| |
Sbjct 772907 TTTCCACTCGCTTCATAAAGAGGTCTGGGATCCACAAGGCGAAGAACAAGTCTCTGGCCC 772848
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
| ||||||||| ||||||||||| ||||| || || ||||| ||||| || |||||
Sbjct 772847 TCTGCTCCTCTTTACCGGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCAAAATGCC 772788
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||||| ||||| ||||| || || || |||||||
Sbjct 772787 ACGGCTCCAGGTACACGGCGAAGGCCCCGGGTCTCT 772752
>seq331
Length=323222
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || || ||||| || |||||| | || ||||| || |
Sbjct 7700 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 7641
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| | || ||| ||||||||| | || |||||||||
Sbjct 7640 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 7581
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || |||||||| ||| ||||||| || | ||| ||||||
Sbjct 7580 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTATAAC 7521
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || || || || || || || || || || | ||||||||||||
Sbjct 7520 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGCGGT 7473
Score = 93.3 bits (102), Expect = 4e-14
Identities = 161/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||||||||| || || || ||||| || || ||||| || |||||| | || || || |
Sbjct 7933 CAAACATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGC 7874
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| |||| | || | ||||| | || ||| ||||||||| | || ||||
Sbjct 7873 CCAGTGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCG 7814
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||| | || || || || ||||| ||| ||||||| || | ||| |
Sbjct 7813 ACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACT 7754
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || || || || || || || || || | |||||||||||||
Sbjct 7753 ACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGCGGTA 7700
Score = 89.7 bits (98), Expect = 5e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||||||||| ||||| || ||||| || || ||||| || |||||| | || || || ||
Sbjct 13111 AAACATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCC 13052
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
||||| | || | || || | ||| ||||||||||||| | || || ||
Sbjct 13051 CAGCGACACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGCATTCCCCCTGA 12992
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||| | || || || || ||||| ||| |||||||
Sbjct 12991 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGA 12953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445731329328480
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