Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq67 553 1e-152 seq30 125 6e-24 seq331 100 3e-16 >seq67 Length=1635559 Score = 553 bits (612), Expect = 1e-152 Identities = 1089/1605 (68%), Gaps = 25/1605 (2%) Strand=Plus/Minus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||| | ||| ||||| ||| |||| | || || ||| |||||||||| || | Sbjct 33458 CTGAATGGATCCGTTGTTGCCAATGAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCCT 33399 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | |||| ||||||| ||||||| | ||||| | |||||||| || || | ||| | Sbjct 33398 CTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCCT 33339 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 ||| ||| |||||| ||| | | ||||| ||| || ||||| ||||| ||||| || Sbjct 33338 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGC 33279 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605 || || || || |||||||| |||| |||||| ||| |||| |||||| || | || Sbjct 33278 TGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGAT 33219 Query 22606 TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 || ||| |||| | ||||||| ||||||||| |||||| || |||||||| || Sbjct 33218 CTTTTCCTTCAGCAGCTTCCAGTCCAACAGATCGGTGGGCGTC---TTCTCCCACATGTC 33162 Query 22666 GTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATAT 22725 ||| || | | || || |||| |||||||||||| ||||| || || | | Sbjct 33161 GTACTGGAGGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCG-AGCT 33103 Query 22726 C-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784 | ||||| || |||||||||||||||| ||| |||| || || ||||| ||||||| Sbjct 33102 CAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGA 33043 Query 22785 TGTTCAATTCGGCGGCGGC--GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTC 22842 |||||| | || ||| | | |||||| |||| |||||||| | ||| || || Sbjct 33042 TGTTCAG--CAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATC 32985 Query 22843 CGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTC 22902 ||||| ||| |||||||| || || || || | || | || ||| | || || Sbjct 32984 CGCCAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTC 32925 Query 22903 GGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAAT---TTT 22959 ||||| ||||| | || ||||| | |||||||||||||| ||||| ||| Sbjct 32924 GGGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTG---ACAATGACTTT 32868 Query 22960 CGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTG 23017 || | | |||||| ||| | ||| | | || || ||||| Sbjct 32867 GGTCACAGATGCTAGTTTTTTAAAGTC--AAAAGTCCGCTCAGGGGTGACGTACATGTTG 32810 Query 23018 ACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATT 23077 | || || ||||| ||||| || || || ||||| || | | ||||| || || ||| Sbjct 32809 AGCGCAATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATT 32750 Query 23078 TCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTG 23137 || || || || ||||| | || || ||||||| ||| ||||||||| ||||| ||| Sbjct 32749 TCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTG 32690 Query 23138 CACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCT 23197 || | || ||||| |||||||||||||| || || || ||| ||||| ||||| || Sbjct 32689 CAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCG 32630 Query 23198 CGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGG 23257 |||||| |||||| | || ||| | ||| || || | ||| || | Sbjct 32629 TGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTG 32570 Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACAC 23317 || | | ||||| || |||| |||| ||| |||| ||||| | | | |||||| Sbjct 32569 TAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACAC 32510 Query 23318 ATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 || ||| ||| | || |||| || | |||| || | || || ||||| || Sbjct 32509 ATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGG 32450 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 |||||||| || || | ||| | | |||||| || || |||||||| |||| |||| Sbjct 32449 GCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 32390 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 ||||| ||||| || ||||||||||| ||||| | ||| || || || ||||| || Sbjct 32389 AAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTG 32330 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 ||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| || || | Sbjct 32329 TTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAAC 32270 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGA 23614 ||||| || |||| | ||| || | ||| ||| ||| || | | | Sbjct 32269 CCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTC---CCTGTTGATCTGATGCAGCTG 32213 Query 23615 ACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCG 23674 || | ||| || ||||| |||| || || || | || || || |||||||||||| Sbjct 32212 ACAGCCACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCG 32153 Query 23675 TAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCT 23734 |||||||| ||||||||||| || || | |||| || ||| || |||| || | Sbjct 32152 TAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGC 32093 Query 23735 TTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATT 23794 || ||| |||| ||| || || || |||||| || || | | ||||| Sbjct 32092 CTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGC 32033 Query 23795 AGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGC 23854 || ||||| || || ||||| || || |||||| || ||| || || | | || | | Sbjct 32032 AGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTC 31973 Query 23855 ATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGT 23914 || | ||||| || |||| ||| || |||||| || || | ||| || || || Sbjct 31972 ATGAGCATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGC 31913 Query 23915 TGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCG 23959 | || || || || ||||| ||| ||| |||||||| ||| Sbjct 31912 TCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCACGGTCG 31868 >seq30 Length=3550406 Score = 125 bits (138), Expect = 6e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||||||| |||||||||||| || || || || || ||||| | || || ||| Sbjct 773368 ACCTCGTCTTTGCTCGTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTG 773309 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || | |||||| | ||||||||| ||||||||||| || Sbjct 773308 CCCAGGTTCTGCTGGTTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTT 773249 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||| || ||| ||||||||||| || ||||| Sbjct 773248 CCCGTTTCCGTCTGAGACTCGATGATGGCGTACCACA 773212 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||| || || || ||||| | ||| |||||| || | ||| | Sbjct 772907 TTTCCACTCGCTTCATAAAGAGGTCTGGGATCCACAAGGCGAAGAACAAGTCTCTGGCCC 772848 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| ||||||||||| ||||| || || ||||| ||||| || ||||| Sbjct 772847 TCTGCTCCTCTTTACCGGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCAAAATGCC 772788 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| ||||| || || || ||||||| Sbjct 772787 ACGGCTCCAGGTACACGGCGAAGGCCCCGGGTCTCT 772752 >seq331 Length=323222 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || |||||| | || ||||| || | Sbjct 7700 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 7641 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| ||||||||| | || ||||||||| Sbjct 7640 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 7581 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| ||||||| || | ||| |||||| Sbjct 7580 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTATAAC 7521 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || || || || || || | |||||||||||| Sbjct 7520 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGCGGT 7473 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || ||||| || |||||| | || || || | Sbjct 7933 CAAACATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGC 7874 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | ||||| | || ||| ||||||||| | || |||| Sbjct 7873 CCAGTGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCG 7814 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || || || ||||| ||| ||||||| || | ||| | Sbjct 7813 ACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACT 7754 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || || || || || || | ||||||||||||| Sbjct 7753 ACAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGCGGTA 7700 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| ||||| || ||||| || || ||||| || |||||| | || || || || Sbjct 13111 AAACATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCC 13052 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | || || | ||| ||||||||||||| | || || || Sbjct 13051 CAGCGACACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGCATTCCCCCTGA 12992 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||| | || || || || ||||| ||| ||||||| Sbjct 12991 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGA 12953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445731329328480