Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq5021 273 5e-69 seq120 224 2e-54 seq2742 161 2e-35 >seq5021 Length=1227 Score = 273 bits (302), Expect = 5e-69 Identities = 579/854 (68%), Gaps = 30/854 (4%) Strand=Plus/Minus Query 15015 ACGCTGGCCAACTCCGGCGTCACCGCCGGGACCTACGCGAAAGTCACGGTGAACGCCAAA 15074 || ||||| |||||||||| ||||| || |||||| ||||||||| || ||||||||| Sbjct 833 ACCCTGGCGGACTCCGGCGTAACCGCTGGCACCTACCCGAAAGTCAACGTAAACGCCAAA 774 Query 15075 GGACTGGTTAC---CGGAGCCACTGGGCTTGTAG-CGAGTGATATTCCGGCCCTTGATGC 15130 || |||||||| ||| || || |||| | || || | || ||||| || | Sbjct 773 GGCCTGGTTACAAGCGGGGC----GGCCTTGACGGCGGCGGACCTGCCCGCCCTCGACGT 718 Query 15131 CGGAAAAATCACCTCCGGCATCTTACCTGCTGCCAGAGGCGGTACCGGCAATGGTATTGG 15190 ||| || ||||| |||||||| | || ||| | ||||| || ||||| | || || Sbjct 717 CGGCAAGATCACTACCGGCATCCTGCCCCTGGCCCGTGGCGGCACGGGCAACGCCATCGG 658 Query 15191 TCAGGCTGCAACGGCGGTCAAACTCGTCGCCCCTCGTACGATCTACCTCGGTGGGGACGT 15250 |||||||| |||||||||||||| | ||||||| || | ||| |||||| | Sbjct 657 CCAGGCTGCGACGGCGGTCAAACTGGCATCCCCTCGAACACTGGCAATCGCTGGGGATGC 598 Query 15251 CAGCGGCTCGACAACGTTCGACGGTAGCGCGAACGCTGGAATCACGGTCACGTTGGCGAA 15310 || |||| | | ||||| || ||||| ||||| | || ||||| ||| |||| || Sbjct 597 CACCGGCAGCGCTGCATTCGATGGCAGCGCAAACGCCAGCATTACGGTTACGCTGGCCAA 538 Query 15311 CTCGGGTGTAAATGCCGGCTCCTACCCCAAAGTCACTGTTAACGCCAAGGGGCTGGTTAC 15370 | ||||| | |||| ||||| |||| |||| || ||| ||||||| || || | Sbjct 537 TACCGGTGTCGCCGACGGCACCTACACCAAGGTCAGGGTAAACCCCAAGGGTCTAGTCAT 478 Query 15371 CGGTGGCGGTGGCCTGACGGCAGCAGACATTCCTGCGTTGGATGCGTCGAAGATTGCGAC 15430 ||||| || || | || |||||||| | |||| || ||||| || || | Sbjct 477 CGGTGCAACCACGCTTACTACCGCCGACATTCCCTCTCTGGACGCCTCGAAAGTTACGTC 418 Query 15431 CGGTCGACTCGATCTTGAACGCTTGCCGTTGGTGTCGCAGGGACTGGCCACGGCAGTGCA 15490 || ||| || ||| |||| | | | || || || ||| ||| ||| Sbjct 417 GGGCATGTTCGCCGATGCCCGCCTGCCCTGGTACGCACAAGGGCTATGCAC--CAGCGCA 360 Query 15491 --TACCAGCGTTGATCCCAACTCGGTGGTCATTCCGCTGGTACTGACCAATCACGCGAAT 15548 | || || || ||| | | ||| ||||| | || || ||||||| ||| Sbjct 359 CCCAACACGACGGACCCGAACACCACGAACATCCCGCTCATCCTCACGAATCACGAGAAC 300 Query 15549 GGCCCAGTGGCTGGCCGCTACTACTACATCCAGACGATGTTCTATCCGACCGTCG--AAG 15606 || || | | || | || | ||| |||||||||||| | || | ||| || | | Sbjct 299 GGTCCGATTCCGGGGCAGTATTTCTATATCCAGACGATGATGTA--CAACCAGCGCAACG 242 Query 15607 GCAACGCGACGCAGATTGCAACCGGCTATGCCGGCG-TGGCTGACATGTACGTTCGTTAT 15665 |||||||| ||||||||| |||| | ||||| || || ||||| || || || Sbjct 241 GCAACGCGGGGCAGATTGCCGTGCGCTACG-CGGCGAACGCCGAAATGTATGTGCGCTAC 183 Query 15666 GCCTACGCTTCCCCCGCAACGACCGATTCGTCCAAGCGGGAGTGGTCAGCCTGGGTCCGC 15725 |||| | | ||||| | || || ||| ||||| |||||| ||| Sbjct 182 ATGTACG--ACGTCGGCAACAAGCG---CG-------GGGTCTGGTCGGCCTGGAAACGC 135 Query 15726 TGCGATCTGGGCGGTGCCTTCGCACACGCGCCCGATGGCGAGCTGGGTGGCTATGTCAAT 15785 |||||| |||||||| | || || | | | | |||||||| ||||| || ||||| Sbjct 134 TGCGATGTGGGCGGTTCATTTGCCAAAGAGGCGGATGGCGAACTGGGGGGTGGGGTCAAC 75 Query 15786 CTGGACTCGATGATTGCTTCGGGCTGGTGGCATCAACCGTTCACCGCAAACGCCAAGAAC 15845 || ||| | |||||||| || || ||||||||||||||||||| ||| |||||||||||| Sbjct 74 CTAGACACCATGATTGCCTCTGGGTGGTGGCATCAACCGTTCAGCGCGAACGCCAAGAAC 15 Query 15846 GGGGCGAACTATCC 15859 || |||||||||| Sbjct 14 GGCACGAACTATCC 1 >seq120 Length=812315 Score = 224 bits (248), Expect = 2e-54 Identities = 494/732 (67%), Gaps = 9/732 (1%) Strand=Plus/Plus Query 31728 TGCCTTGGTGGCATCGACGTGGACCCGGCCGGCCTCCGCGACTTCGAGCGCCTGGCCGGT 31787 ||| | |||||||||||||| || |||| | |||| || || || ||||| ||| Sbjct 44326 TGCATCGGTGGCATCGACGTCAACGCGGCAGCAATCCGGGATTTTGAACGCCTCAGCGGA 44385 Query 31788 GTCCCG-GGCACCCTGCTGGACCTGTTCACCCGCGACCAATACATCCGCTTCCATGGAAC 31846 || || || ||| | || || || ||| || || || | || |||||| || | Sbjct 44386 -TCTCGCGGAACCGTCCTCGATCTCTTCGATCGTGATCAGTTCAAGGACTTCCACGGCAA 44444 Query 31847 GGAGCCTCCCGCCGGT-TGGCGGGAGGCAACCCCGGAGGAAATCCGCCGCGCCGCCGGCG 31905 ||||| || || || ||||| || || || ||| || ||||| | || ||||||| Sbjct 44445 AGAGCCGCC-GCGGGAGTGGCGCGAAGCCACTGCGGCAGATATCCGTCATGCGGCCGGCG 44503 Query 31906 GGCGCCGACCGG-ATGCCGTGTTCATCAGCTCGCCCTGCAAAGGCGCCAGCGGCCTGCTG 31964 | || ||| || ||| ||| || | ||||||||||| |||||| |||||| Sbjct 44504 G-CGAATACCCCCATATCGTCTTCCTCTCGGCCCCCTGCAAAGGGTTCAGCGGACTGCTG 44562 Query 31965 TCGGAGAAGATGAGCCTGACTCCGAAGTACCAGGCGCTGAACGAGTTGACGCTGCGCTGC 32024 ||||| || ||| ||| | ||||||||||| ||||| | || || || || Sbjct 44563 TCGGAAAACCGCAGCAAGACCGCCAAGTACCAGGCATTGAACCGTCTAACCCTACGTGGC 44622 Query 32025 ATCTGGCTGATGGGCGAGGCATGGGCTGATGACCCGGTGCCGCTGATCGTCTTCGAGAAC 32084 | ||||||||| ||||| | ||||||| | ||||||||| ||||||||| Sbjct 44623 GTATGGCTGATGCTGGAGGCCTTCCAGGATGACCTCCCGGAGCTGATCGTTTTCGAGAAC 44682 Query 32085 GTCCCGCGTCTGGCGAGCCGCGGCCGGCACCTGCTGGACCAGATCAACAGCCTGCTCGGT 32144 || || || | || || ||||| | ||| || || |||||| ||||| | Sbjct 44683 GTGCCTCGCATCCAGAATCGTGGCCGCCGCCTCCTCGATCAGATCGTTCAACTGCTGCGC 44742 Query 32145 GGCTTCGGCTACGCCGTGGCGGAAACCACTCACGACTGCGGCGAGCTGGGCGGTCTGGCC 32204 ||| ||| |||||| || || || || ||||| ||||||||||| || || || || Sbjct 44743 CGCTACGGGTACGCCACTGCCGAGACGACGCACGATTGCGGCGAGCTCGGTGGCCTCGCT 44802 Query 32205 CAGTCGCGGAAGCGCTTCCTGCTGGTGGCGCGGCACGTCGAGAAAGTGCCGCCCTTCCTG 32264 || || || || || |||||||| || | || || || | || |||||| |||| | Sbjct 44803 CAATCCCGTAAACGATTCCTGCTCGTCGGCCGCAACATCAACAAGGTGCCGGACTTCATC 44862 Query 32265 TACGAGCCGGAGAAGAAGAGCCTGCGCGCCGTCGGCGACATCCTCGGCCGCATGCCGCTG 32324 || || || | ||| ||| || || | || ||||| ||||| ||||| ||||| || Sbjct 44863 TATGAACCTGTGAAAAAGTCGCTTCGTTCGGTAGGCGATATCCTGGGCCGTATGCCTCTC 44922 Query 32325 CCCGGCGATATCGACGCCGCCGGCCCGATGCACCGTGTGCCATCCCTGCAGTGGAAGACC 32384 |||||| || |||| || ||| || |||||||| || || |||| | ||||| Sbjct 44923 CCCGGCCATTTCGA---CGGCGGTCCAATGCACCGCGTACCGAACCTGTTTTTCAAGACT 44979 Query 32385 TGGGTTCGCCTGGCACTGGTGCGAGCCGGCAGCGACTGGCGCAGCCTGAACGACCTCGCC 32444 ||| | | ||||| | || ||| |||| |||||||| |||||| || Sbjct 44980 TGGTTGAGGCTGGCCTTCGTTGAAGCGGGCAAGGACTGGCGATCGCTGAACAGGCTGAAT 45039 Query 32445 GTCGAGGACGGC 32456 ||||| |||||| Sbjct 45040 GTCGAAGACGGC 45051 Score = 118 bits (130), Expect = 2e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33116 CACCTGGCACAGGCCGTTTACCACCCTGGAACTCGCCGCGCTGCAGAGCTTGGTCGACCC 33175 ||||||||| | || || ||||| || |||||| ||||| || ||| || |||| || Sbjct 45984 CACCTGGCATCGTCCCTTCACCACGCTCGAACTCTGTGCGCTCCAAAGCCTGATCGAGCC 46043 Query 33176 CGAAGAGCAGTTGGTCCTCGACGGCCTGAGCGACAGCGACTGGCGCGAGCGGATCGGCAA 33235 |||||| | ||| |||||||| || ||| | |||||| | |||||||||||||| Sbjct 46044 GGAAGAGTATCTGGAACTCGACGGGCTCTCCGATGGTGACTGGAGGGAGCGGATCGGCAA 46103 Query 33236 TGCGGTTCCGCCGGCTGCGGCCGAGGCCATCGCCGGCGTGATGGGCACCACCCTGTTGTT 33295 ||||| || |||| ||| ||||| || |||| || | | | || |||||||| | | Sbjct 46104 CGCGGTGCCCCCGGATGCAGCCGAAGCGATCGGCGAGGCGTTCGGTACCACCCTACTCCT 46163 Query 33296 GG-CTGAGGCTGGCGAGACCTTCCTGCTCAGTAGCACGCCGATCTGGGTGCG 33346 || ||| || ||| |||||| | || | | || || |||||||| || Sbjct 46164 GGTCTGGAGCGGGC-AGACCTACTCAATCGGCAAAACCCCAATCTGGGTACG 46214 >seq2742 Length=6849 Score = 161 bits (178), Expect = 2e-35 Identities = 725/1131 (64%), Gaps = 51/1131 (5%) Strand=Plus/Minus Query 2656 TCGGTCCAGCCGGCGTCGAATTCGAGGCGGCCGTTCTTGATCACTGACCAGGCCTTCATG 2715 |||||||| ||||| || |||||| ||| | || |||||| | |||||| | Sbjct 2240 TCGGTCCAACCGGCATCCCATTCGATGCGCTTGCCCTGGATCACGTCCTGGGCCTTGAGC 2181 Query 2716 ACCAACTGCGTCTTCACCTCGGGCGAGTAGCTGAAGGTGCGCACCCCCGGG-AAGAACTG 2774 |||| ||||| |||| | |||| |||| | | | ||| ||| ||||| | Sbjct 2180 ACCAGGGCATTCTTCGCCTCCAGGCTGTAG-TGAATCGGAGTAGCCCGGGGGAAGAAGTC 2122 Query 2775 GCGCACCAGCTGCGCGACGCCAGAGCCCATGCCGGTGGTGTCGACGCCGATGTAGGTGAC 2834 |||||| | || || | || | |||||| |||||| |||||||| ||| Sbjct 2121 TTTCACCAGGTCGAACACCCCGTAACCGACGCCGGTAATGTCGATGCCGATGTGCTGGAC 2062 Query 2835 CCAGTAGCGCTGGGTCACCTTGCGGATGAACTCGGCCTGTTCGGCGAAGTCCTTGCCGCG 2894 | |||||| | || ||| ||| || ||||| | | ||| | | || || Sbjct 2061 GTTGAAGCGCTCGCACAGCTTCTCGATCTGCTTTGCCTGATGCGTGAACGACGTCCCCCG 2002 Query 2895 GAATTGATGGCGCTCCAGCACGCGGAACTTGCCGCCCGGTACCGCCGGAGGCGCCACCAC 2954 | || |||||| | ||||||||||||||||| || || || || || || Sbjct 2001 CCAGCTGTGCTTCTCCAGGATTCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGAC 1942 Query 2955 CACCAGACCCGCGGTGTCGCCCGTCTCGGC-GGGGTCATAGCCCAGCCACACCTGGCGAT 3013 || |||| ||||| || ||| | ||||||||| || ||||| ||| |||| | Sbjct 1941 AACGCACGTCGCGTCGTCGCGGGT-TCGACTGGGGTCATACCCGAGCCAGACCGGGCGGT 1883 Query 3014 CACCGAACGGCCGCAGCGCGAACGGCTTGTAGTCCTCCGACCACAGGTCCCAGCTATCGA 3073 ||||||||||| | | ||| | |||||| | ||| ||| || || ||| Sbjct 1882 TGTCGAACGGCCGCGGGCTGTCCGGGTCGTAGTCA---GTCCATAGGCCCAAG---TCGG 1829 Query 3074 CCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTCGCGCCGTC--GTCGACGAACTG 3131 ||| ||| ||| |||||| | ||| ||| | || ||||| ||||| Sbjct 1828 AATAGCAGCGCTCCAGGTCGGTCAAGGCGAA--TGCAGCCTGGGTGCTGTCGATGAACTT 1771 Query 3132 GCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTACTCGAGACGCAGCTCGTCGATGTC 3191 |||||| | ||| | | ||| ||| |||||||||| || |||| || | ||| Sbjct 1770 GCACATGAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTC 1711 Query 3192 GAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACGATCTGGCGCCAGATGCG 3251 |||||| | |||||| | ||| ||| || | || |||| || || |||||| | Sbjct 1710 GAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGCCC 1651 Query 3252 GTCCTCGCACAGT-CGCC--CTTGCTGCAGGGCGTCA-TGACTTACGTC--GATCTTGAT 3305 |||| ||||| |||| | || | | || || || ||| | | ||| | Sbjct 1650 GTCCGGGCACAACGCGCCGGCATGGATCTGCGCTTCGCTGGGCCACGGCCCGGCCTTCTT 1591 Query 3306 GCGATCGGCGGCCGGCTTGCCCTTGTTGAAGCGCTCGCCAGTCCAGAATGTGTAGGCCTC 3365 || ||| ||||| ||| ||| |||||| |||||| | | || |||| Sbjct 1590 ----TCCGCG-----CTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTG 1540 Query 3366 ATGCGCCATCGAACTGGGCGTCGAGAAGTAGGTCCGGCGGTAGCGCTTCTGCATC----G 3421 |||| | || |||||||| |||||||||||| |||| | ||| ||||| | Sbjct 1539 GTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCA---CTT-TGCATGCGAGG 1484 Query 3422 CCATACCGCTGGCGACCTTGTTCAGCTCCTTGAACTTGAACGTCCAGAAGAACTCGTCGA 3481 |||| ||||||| ||| | | ||||| || ||| ||| ||||||| | ||||||| Sbjct 1483 CCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGA 1424 Query 3482 AGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGGTGCCGAGGAAGTGCAATT 3541 ||||| || ||||||||||| ||| || || ||| || ||| || ||| || Sbjct 1423 TGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTT 1364 Query 3542 CCGC---------GCCG---TTCGGCAGGATGATCGGGTCGCCCTTCAGTTCGACACCTA 3589 |||| |||| || || |||||| || | ||| ||| |||| | | | Sbjct 1363 CCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGA 1304 Query 3590 CCGCATCGCGC-GCGAAGGCCTGGATATACGCCTTGAAGATGTGCGCTTGGGCCTTGCTG 3648 | ||| |||| ||||| || ||| || ||| | | | ||||| ||| Sbjct 1303 AC-CATTGCGCGGCGAACGCGACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTC 1245 Query 3649 GCCGACAGGAATATCTGGTTGCGCCCCGTTTCCAGCGCGTCGATCAGCGCCTCGCGGGCG 3708 || |||||||| ||||||||| ||| || || ||||| || | ||| ||| |||| Sbjct 1244 GCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCG 1185 Query 3709 AAGTAGAACGTGGCGCCGATCTGCCGCGACTTGAGAATCACGCGGGTTCGC 3759 |||||| | || |||||||| |||||||| || || |||| | ||| Sbjct 1184 AAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATATGGCGGATCCGC 1134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113725899348776