Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq120 275 2e-69 >seq120 Length=812315 Score = 275 bits (304), Expect = 2e-69 Identities = 553/818 (68%), Gaps = 4/818 (0%) Strand=Plus/Minus Query 43184 GCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGCCAATCCGAGCCAGCCTCGACGAAGGC 43243 |||||| ||||| ||| |||| ||||| ||||| ||| ||| || || |||||||| Sbjct 45051 GCCGTCTTCGACATTCAGCCTGTTCAGCGATCGCCAGTCCTTGCCCGCTTCAACGAAGGC 44992 Query 43244 AAGGCGCACCCACGTCTTCCACTGCAGCGAAGGAACACGATGTAGGGGGCCGCCTGCAGG 43303 || | || ||| ||||| | ||| || || || || | || ||||| | Sbjct 44991 CAGCCTCAACCAAGTCTTGAAAAACAGGTTCGGTACGCGGTGCATTGGACCGCCGTCGAA 44932 Query 43304 GTCGCCTGGCAGCGGCAGTTTCTCAAGGATTTCGCCGACGCCTCGCAGGCGCTTCTTTTC 43363 | ||| || || |||| | ||||| ||||| || || || ||| || | Sbjct 44931 ATGGCCGGGGAGAGGCATACGGCCCAGGATATCGCCTACCGAACGAAGCGACTTTTTCAC 44872 Query 43364 GGGCTCGTAAAGGAACGGAGGCACAGTCGGTTCGTGGCGCG--CAACAAGCAGGAAGCGC 43421 || || || | ||| ||||| | ||| || ||| | || |||||||| || Sbjct 44871 AGGTTCATAGATGAAGTCCGGCACCTT--GTTGATGTTGCGGCCGACGAGCAGGAATCGT 44814 Query 43422 TTGCGGCTCTGACCCAAACCGCCGATCTGACCGCAGTCGTGGGTGGTCTCGGCGACGGCG 43481 || ||| ||| | | || |||| || ||||| ||||| || |||||||| |||| Sbjct 44813 TTACGGGATTGAGCGAGGCCACCGAGCTCGCCGCAATCGTGCGTCGTCTCGGCAGTGGCG 44754 Query 43482 AAATTGTAGCTCCGCAGCAGGGCAATGATCTGATCGAGCAACTTGCGGCCACGGTTCATG 43541 | ||||| |||||||| || |||||||||||| | ||||||||| ||| | Sbjct 44753 TACCCGTAGCGGCGCAGCAGTTGAACGATCTGATCGAGGAGGCGGCGGCCACGATTCTGG 44694 Query 43542 ATGCGCGGCACATTTTCGAAAATGATCAGCTTGGGAAGCTTGTCCTTGAAGGCTTCCAGC 43601 ||||| ||||| || ||||||| |||||||| || || | |||| |||||| |||||| Sbjct 44693 ATGCGAGGCACGTTCTCGAAAACGATCAGCTCCGGGAGGTCATCCTGGAAGGCCTCCAGC 44634 Query 43602 ATCAGCCACACGCCGCGCAACGTCAGCCGATTGAGGGCCTGATACTTGGCGGTCGCGCTC 43661 |||||||| ||||| || | || || || || | ||||| |||||||||||| ||| Sbjct 44633 ATCAGCCATACGCCACGTAGGGTTAGACGGTTCAATGCCTGGTACTTGGCGGTCTTGCTG 44574 Query 43662 GACTGCTCGGACAGCAAGCCGGAGAAACCTTTGCATGGAGCGGACAAGAACACGATATCG 43721 | || ||||||| ||| ||| |||||||| || || || | ||| ||||||| | Sbjct 44573 CGGTTTTCCGACAGCAGTCCGCTGAACCCTTTGCAGGGGGCCGAGAGGAAGACGATATGG 44514 Query 43722 GGGAACTCGCCATGCGCTGCGCGCCGAATGTCGTCCGGTACCGCCTGCTGCCAATCGGGA 43781 ||| | ||||| || || | || || || ||| || | |||| || | Sbjct 44513 GGGTATTCGCCGCCGGCCGCATGACGGATATCTGCCGCAGTGGCTTCGCGCCACTCCCGC 44454 Query 43782 TCAGGGTCGCGACTGTGAAAGGCCCGGTACTGCTCCAGGTCGAACAGATCGAGCAGGGTG 43841 || || | ||| ||| || | |||| || | ||||| |||||||| | ||| Sbjct 44453 GGCGGCTCTTTGCCGTGGAAGTCCTTGAACTGATCACGATCGAAGAGATCGAGGACGGTT 44394 Query 43842 CCGGGAACGCCGGCAAGGCGCGTGAAATCACGGATGGCCGCCGGATCGTTGTCGATGCCC 43901 ||| || ||| ||||| ||||| ||||| || |||| | | ||||||||| Sbjct 44393 CCGCGAGATCCGCTGAGGCGTTCAAAATCCCGGATTGCTGCCGCGTTGACGTCGATGCCA 44334 Query 43902 CCGATGCAGCGGAACTTGGCATTCAGACTACCGACACGAGCCGATCCCTTGTTGAAGCCT 43961 |||||||||||||||||| | | || | || || |||| | |||||||| ||| Sbjct 44333 CCGATGCAGCGGAACTTGCCTTGGAGGTTCCCTACGCGAGGGTTGGCTTTGTTGAAACCT 44274 Query 43962 TTGGCGCCGGCACCGAGCCCGCAAAACAGATGAAAGTG 43999 || || || | || |||||||| ||||| || || || Sbjct 44273 TTAGCTCCACCGCCCAGCCCGCAGAACAGGTGGAAATG 44236 Score = 82.4 bits (90), Expect = 3e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 41910 GTCTCGCCGGTCATGGCGAGCAGCAGTGTGGTTCCCATAACGTCGGCGATCGCAGTCGCC 41969 |||| ||| || | | || || || ||||| || | | ||| ||||||| || Sbjct 46181 GTCTGCCCGCTCCAGACCAGGAGTAGGGTGGTACCGAACGCCTCGCCGATCGCTTCGGCT 46122 Query 41970 GCATCCGGAGGTACCGCGTTCCCGATGCGCTCTCGCCAAGCGGAATCGGACTGGCCGTCG 42029 |||||||| || |||||||| ||||| ||||| | ||| | |||||| | |||||| Sbjct 46121 GCATCCGGGGGCACCGCGTTGCCGATCCGCTCCCTCCAGTCACCATCGGAGAGCCCGTCG 46062 Query 42030 AGGGTGA-ATATCTCGTCTGGATCAACGAGGCTCTGCAACGCCGCTAACTCGAGAGTGGT 42088 || | ||| ||| || || || | ||||| || | ||| | ||||| ||||| Sbjct 46061 AGTTCCAGATA-CTCTTCCGGCTCGATCAGGCTTTGGAGCGCACAGAGTTCGAGCGTGGT 46003 Query 42089 GAACGGACGATGCCACGTG 42107 ||| ||||||||||| ||| Sbjct 46002 GAAGGGACGATGCCAGGTG 45984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183595876788984