Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq67 531 7e-146 seq30 93.3 6e-14 >seq67 Length=1635559 Score = 531 bits (588), Expect = 7e-146 Identities = 1316/1980 (66%), Gaps = 33/1980 (2%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCA-TAATCCTATTCTTGATCTCATCATTCCATAATTTTC 65145 |||||||||||| | ||||| | | | | ||||| ||||| || ||||| | | Sbjct 33458 CTGAATGGATCCGTTGT-TGCCAATGAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCC 33400 Query 65146 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 65205 |||| || | || | || ||||| ||||| || | ||||| |||||||| | || | Sbjct 33399 TCTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCC 33340 Query 65206 TCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAG 65265 | || ||||| || || ||||| || | ||| | |||||| || || |||| || || | Sbjct 33339 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTG 33280 Query 65266 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 65325 | || || || || ||||| || |||| || || || || || | |||| | | || Sbjct 33279 CTGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGA 33220 Query 65326 TTTTATCTTTTAG-AGGTTCCCAATTCCAA-AGATCCGACGGTACAACNNNNNNNNNNNN 65383 | || || || || || |||| | ||||| ||||| | || | | Sbjct 33219 TCTTTTCCTTCAGCAGCTTCC--AGTCCAACAGATCGGTGGG--CGTCTTCTCCCACATG 33164 Query 65384 NNNT--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCC 65441 | || || || || || ||| | || ||| | || || ||||| || || | Sbjct 33163 TCGTACTGGAGGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGC 33104 Query 65442 TTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTC 65501 | | || || || || |||||||| | || |||| || ||||| || ||||| | Sbjct 33103 TCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGG 33044 Query 65502 TTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCT 65561 | || || || || || |||| ||||| || ||| | || || || || || Sbjct 33043 ATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCC 32984 Query 65562 GCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT 65621 || || |||||||| || || || || || || || | ||| || || | || ||||| Sbjct 32983 GCCAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTCG 32924 Query 65622 GGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC 65681 || | ||||| | ||||| || || || || || | ||||||||||| |||||| | Sbjct 32923 GGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGACTTTGGTC 32864 Query 65682 AC--ATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACATGTTCAATG 65736 || || || ||||| ||| ||||| |||||| | || ||||||| | | Sbjct 32863 ACAGATGCT--AGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGCG 32806 Query 65737 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 65796 ||| || ||||||||||| || |||||||||| | | |||| | || || | Sbjct 32805 CAATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTG 32746 Query 65797 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 65856 |||| || || || | ||||| || || | ||| || || || |||||| ||| || | Sbjct 32745 TGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGG 32686 Query 65857 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 65916 | || || || || ||| | || ||||| ||||| |||| || || || || || | || Sbjct 32685 CGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCGTGCC 32626 Query 65917 AGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT--AGTGTATA 65974 | || ||||||| | | | ||| ||| || | || ||| |||||| | Sbjct 32625 ACACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGA 32566 Query 65975 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACAT 66034 || || ||||| || |||||| | ||||| || ||||| |||| |||||||| Sbjct 32565 GCTTC--TCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACAT 32508 Query 66035 CAACGACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 66092 || ||||| ||| || | ||| ||||| ||||| || | ||||| ||||| || Sbjct 32507 CAGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGG 32450 Query 66093 GC-TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 || || ||| | ||||||| || || ||||| |||||||| ||||| || || || || Sbjct 32449 GCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAG 32391 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 ||| | | | ||| | |||||||| |||| ||| ||||| | |||| || | ||| Sbjct 32390 GAAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTT 32331 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 ||| || ||||| || | || | || ||||| || |||||||||| ||| || | | Sbjct 32330 GTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAA 32271 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAAT 66331 || || || | || || || |||| || ||||| || ||| | || || | Sbjct 32270 CCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTGATCTGATGCAGCTGAC 32211 Query 66332 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 66391 | | ||| ||||| || ||| || ||||| | || || | || | || || || Sbjct 32210 AGCCACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTA 32151 Query 66392 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 66451 |||||| || || || || ||| ||||| || || || ||||| |||| || | | Sbjct 32150 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCT 32091 Query 66452 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 66511 | || || ||||| || | ||||| || ||||| || ||||| || || || || || Sbjct 32090 GTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAG 32031 Query 66512 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 66571 ||||| |||||||| |||| ||| || ||| | || || || || | || | ||| Sbjct 32030 GTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTCAT 31971 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 | ||||||||| |||| ||| | | ||| ||| || |||| || |||||| || Sbjct 31970 GAGCATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTC 31911 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 || ||| || || ||||| ||||||| || ||||| || ||| |||| || | ||||| Sbjct 31910 CAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCACGGTCGAAAATGATGGCGGAGTT 31851 Query 66692 GAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT 66750 ||| || || | | | || | || | || | ||| || || || ||||| Sbjct 31850 GAGGCGGTCTTTGTTCTCCTGGACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGA-- 31794 Query 66751 GTTTCCCATTTTTA--GGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 66808 || | | || | || |||||||||||| | | ||||||||||| || || || | Sbjct 31793 GTGGCGTTTGTTCAAGGGGTTGACATAGTTGTACAGGTCCTCCATCACGTCGCTGAACAC 31734 Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868 || || || |||||||| || ||||| ||||| || | ||| || | || ||||| || Sbjct 31733 CTTCTTGGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGAGCAGCGAGGATTGCATAGTC 31674 Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 66928 || |||| || || |||||| || || || || ||||| ||||| | || || || Sbjct 31673 GGGGTGTTTGGTTGTGAGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGT 31614 Query 66929 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATG 66988 || || || | || | || || || |||||||| | || | ||||| | | Sbjct 31613 GGTGACGCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCTGGATCCACAAA 31554 Query 66989 ATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 67048 |||| ||| | || || || | || || || || ||||||||||| |||||||| Sbjct 31553 GTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 31494 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 33720 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCAATGTGGATGT 33661 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 33660 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCACGGTCGGCTGCCATCTTGAGCACGGTCT 33601 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 65074 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 33600 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 33552 >seq30 Length=3550406 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || || |||||||| || || || ||||| |||| || || | | Sbjct 771459 CACTGAACACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCAGCGAGGA 771400 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 || || || ||||||| || || |||||| || | || |||||||||||||||| Sbjct 771399 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 771340 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || ||||| || |||||| | || | || ||||| || ||||| Sbjct 771339 GCTCCACCGTGGTGACTCCACTGTACAGACCCTGGATCACTTTCAT 771294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658121018254960