Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq67 515 6e-141 seq30 87.8 3e-12 >seq67 Length=1635559 Score = 515 bits (570), Expect = 6e-141 Identities = 1314/1977 (66%), Gaps = 27/1977 (1%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCC-ATAATCCTATTCTTGATCTCTTCATTCCATAATTTTC 79024 |||||||||||| | |||| || | | | ||||| ||||| || ||||| | | Sbjct 33458 CTGAATGGATCCGTTGT-TGCCAATGAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCC 33400 Query 79025 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 79084 |||| || | || | || ||||| ||||| || | ||||| |||||||| | || | Sbjct 33399 TCTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCC 33340 Query 79085 TCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAG 79144 | || ||||| || || ||||| || | ||| | || || || || |||| || || | Sbjct 33339 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTG 33280 Query 79145 CAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGA 79204 | || || ||||| ||||| || |||| || || || || || | |||| | || Sbjct 33279 CTGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGA 33220 Query 79205 TTTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATC 79262 | || || || || || || ||| ||| | ||||| | || | | | | ||| | || Sbjct 33219 TCTTTTCCTTCAGCAGCTT-CCAGTCCAACAGATCGGTGGGCGTCTTC-TCCCACATGTC 33162 Query 79263 ATATTGTAGAATACCGTTACT-AGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCT 79321 || || || || || || || | || | || ||| ||| || || || || || || Sbjct 33161 GTACTGGAGGATCCCCTTGCTGACCGGA-GAGCCTTCGTACGTCTCGTAGGGGCCGAGCT 33103 Query 79322 TTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCT 79381 |||| | || || |||||||| | || |||| || ||||| || || || | Sbjct 33102 CAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGA 33043 Query 79382 TATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTG 79441 | || || || || || |||| ||||| || ||| | || || || || || | Sbjct 33042 TGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCG 32983 Query 79442 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTG 79501 | || |||||||| || || || || || || || | ||| || || | || ||||| | Sbjct 32982 CCAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTCGG 32923 Query 79502 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCA 79561 | | ||||| | ||||| || || || || || | || ||||| || |||||| || Sbjct 32922 GCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGACTTTGGTCA 32863 Query 79562 CATCCTTTAGTTTGAGAAAATCAAA---TCGTCCATCTATTACAAACATGTTCAACGCGA 79618 || |||||| ||| ||||| || || | || ||||||| | ||| | Sbjct 32862 CAGATGCTAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGCGCAA 32803 Query 79619 CAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGC 79678 || ||||||||||| || |||||||||| | | |||| | ||||| |||| Sbjct 32802 TGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTGTGC 32743 Query 79679 AGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 79738 ||||||| || | || || || || | ||| || || || |||||| ||| || || | Sbjct 32742 AGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGT 32683 Query 79739 CCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 79798 | || || || ||| |||| ||||| ||||| |||| || || || || || | ||| | Sbjct 32682 CTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCGTGCCACA 32623 Query 79799 CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTAT--TGTGTATATAA 79856 | ||||||| | | | |||| ||| || | || ||| ||||| | Sbjct 32622 CCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCT 32563 Query 79857 TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAA 79916 || || ||||| || |||||| ||||| | || ||||| || | |||||||||| Sbjct 32562 TC--TCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAG 32505 Query 79917 CGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 79973 ||||| ||| | | |||| |||| ||||| || | ||||| ||||| || || Sbjct 32504 AGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGGGCG 32447 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 || ||| || ||||||| || |||||||| |||||||| ||||| || || || ||||| Sbjct 32446 TAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 32388 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | | ||| | |||||||| |||| ||| ||||| | |||| |||| |||||| Sbjct 32387 GTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTT 32328 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || ||||| || | || | || ||||| || |||||||||| ||| || | | || Sbjct 32327 GCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCC 32268 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 || || | || || || |||| || ||||| || | | | || || | | Sbjct 32267 GTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTGATCTGATGCAGCTGACAGC 32208 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || ||| || ||||| | || || | || | || || ||||| Sbjct 32207 CACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGAT 32148 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 ||| || ||||| || || ||||| || || || ||||| |||| || | | | Sbjct 32147 GCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTT 32088 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || ||||| || | ||||| || ||||| || ||||| || || ||||| || || Sbjct 32087 GGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTT 32028 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| |||||||| |||| || || ||| | || || || || | || | ||| | Sbjct 32027 GTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTCATGAG 31968 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| |||| ||| | | ||| || || |||| || ||| || |||| Sbjct 31967 CATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTCCAG 31908 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 ||| || || ||||| ||||||| || ||||| || ||| |||| || | |||||||| Sbjct 31907 AGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCACGGTCGAAAATGATGGCGGAGTTGAG 31848 Query 80574 TTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAATGTT 80632 || || | | | || | || | || | ||| || || || ||||| || Sbjct 31847 GCGGTCTTTGTTCTCCTGGACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGA--GTG 31791 Query 80633 TCCCATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 80690 | | || | || || ||||||||| | | ||||||||||| || || || | || Sbjct 31790 GCGTTTGTTCAAGGGGTTGACATAGTTGTACAGGTCCTCCATCACGTCGCTGAACACCTT 31731 Query 80691 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGG 80750 || || || ||||| || ||||| ||||| || | || || | || ||||| || || Sbjct 31730 CTTGGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGAGCAGCGAGGATTGCATAGTCGGG 31671 Query 80751 ATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGT 80810 |||| || || |||||| || || || || ||||| ||||| | || || || || Sbjct 31670 GTGTTTGGTTGTGAGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGTGGT 31611 Query 80811 TACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATC 80870 || || | || | || || || |||||||| | || | ||||| | | || Sbjct 31610 GACGCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCTGGATCCACAAAGTC 31551 Query 80871 AGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 || ||| | || || || | || || || || ||||||||||| |||||||| Sbjct 31550 AGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 31494 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || |||||| || |||| || || || ||||| | Sbjct 33720 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCAATGTGGATGT 33661 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 33660 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCACGGTCGGCTGCCATCTTGAGCACGGTCT 33601 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 33600 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 33552 >seq30 Length=3550406 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || || ||||| || || || ||||| |||| || || | | Sbjct 771459 CACTGAACACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCAGCGAGGA 771400 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 || || || ||||||| || || |||||| || | || |||||||||||||||| Sbjct 771399 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 771340 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || ||||| || |||||| | || | || ||||| || ||||| Sbjct 771339 GCTCCACCGTGGTGACTCCACTGTACAGACCCTGGATCACTTTCAT 771294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718212290202160