Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq67 489 2e-133 seq30 96.9 5e-15 >seq67 Length=1635559 Score = 489 bits (542), Expect = 2e-133 Identities = 1311/1993 (66%), Gaps = 25/1993 (1%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||||||||| | |||| | | | || || ||||| || ||||| | || Sbjct 33458 CTGAATGGATCCGTTGTTGCCAATGAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCCT 33399 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | || ||||||||||| || | ||||| |||||||| | || || Sbjct 33398 CTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCCT 33339 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | ||| | ||||| || || |||| || || || Sbjct 33338 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGC 33279 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || ||| || || || | || ||| ||| Sbjct 33278 TGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGAT 33219 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAA-AGATCCGATGGTACAACNNNNNNNNNNNNN 71346 || || || || || |||| | ||||| ||||| | || Sbjct 33218 CTTTTCCTTCAGCAGCTTCC--AGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCG 33161 Query 71347 NNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTT 71405 || || || || | || | || ||| | || || ||||| || || | Sbjct 33160 TACTGGAGGATCCCCTTGCTGACCGGA-GAGCCTTCGTACGTCTCGTAGGGGCCGAGCTC 33102 Query 71406 TTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTT 71465 |||| || || || |||||||| | || | || || ||||| || || || | | Sbjct 33101 AGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGAT 33042 Query 71466 ATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 71525 || || || || || ||||| ||||| || ||| | || || || || || || Sbjct 33041 GTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGC 32982 Query 71526 TAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGG 71585 || ||||||||||| || || || || ||||| | ||| || || | || ||||| || Sbjct 32981 CAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTCGGG 32922 Query 71586 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC 71645 | ||||| | ||||| || || || || || | |||||||| || |||||| ||| Sbjct 32921 CACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGACTTTGGTCAC 32862 Query 71646 ATCCTTTAGTTTGAGAAAATCAAATCTCC---CATCTATTACAAACACGTTCAAGGCAAC 71702 | |||||| ||| ||||| ||| || | || ||| ||| | |||| Sbjct 32861 AGATGCTAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGCGCAAT 32802 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 || ||||||||||| || |||||||||| | || |||| | ||||| ||||| Sbjct 32801 GGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTGTGCA 32742 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || || || | ||||| || || | ||| || || || |||||| ||| || || || Sbjct 32741 GAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTC 32682 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 71882 || || || || |||| ||||| ||||| |||| || || || || || | ||| || Sbjct 32681 TTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCGTGCCACAC 32622 Query 71883 GACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTAT--TGTGTATATAAT 71940 ||||||| | | | |||| ||| || | || ||| ||||| | | Sbjct 32621 CTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTT 32562 Query 71941 CGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAAT 72000 | || ||||| || |||||| | ||| | || ||||| ||||| |||||||||| Sbjct 32561 C--TCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGA 32504 Query 72001 GACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 72057 ||||| ||| | | ||| |||| ||||| || | ||||| ||||| || || | Sbjct 32503 GACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGGGCGT 32446 Query 72058 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 | ||| || ||||||| || |||||||| |||||||| ||||| || || || ||||| Sbjct 32445 AGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAG 32387 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | | ||| | |||||||| |||| ||| ||||| | |||| || | |||||| Sbjct 32386 TCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTG 32327 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || ||||| || | || | || ||||| || |||||||||| ||| || | | || Sbjct 32326 CCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCG 32267 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || || || || || |||| || ||||| || | | | || ||| | | Sbjct 32266 TTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTGATCTGATGCAGCTGACAGCC 32207 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| || ||| || ||||| | || || | || | || || |||||| Sbjct 32206 ACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATG 32147 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 72417 || || || || || ||| ||||| || || || ||||| |||| || | | | Sbjct 32146 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTG 32087 Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | ||||| || ||||| || ||||| || || ||||| || ||| Sbjct 32086 GTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTG 32027 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || |||||||| |||| || || ||| | || || || || | || | ||| | | Sbjct 32026 TAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTCATGAGC 31967 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || ||||| |||| ||| | | ||| || || |||| || |||||| |||| | Sbjct 31966 ATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTCCAGA 31907 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGT 72657 || || || ||||| ||||||| || ||||| || ||| |||| || | || ||||| Sbjct 31906 GTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCACGGTCGAAAATGATGGCGGAGTTGAGG 31847 Query 72658 TTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTT 72716 || || | | | || || || | || | ||| || || || ||||| || Sbjct 31846 CGGTCTTTGTTCTCCTGGACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGA--GTGG 31790 Query 72717 CCCATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 72774 | | || | || || ||||||||| | | ||||||||||| || || || | || Sbjct 31789 CGTTTGTTCAAGGGGTTGACATAGTTGTACAGGTCCTCCATCACGTCGCTGAACACCTTC 31730 Query 72775 tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGA 72834 || || || ||||| || ||||| ||||| || | || || || || ||||| || || Sbjct 31729 TTGGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGAGCAGCGAGGATTGCATAGTCGGGG 31670 Query 72835 TGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTT 72894 |||| || || |||||| || || || || ||||| ||||| | || || || || Sbjct 31669 TGTTTGGTTGTGAGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGTGGTG 31610 Query 72895 ACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCA 72954 || || | || | || || || |||||||| | || | ||||| | | ||| Sbjct 31609 ACGCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCTGGATCCACAAAGTCA 31550 Query 72955 GTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAACATTT 73014 | ||| | || || || | || || || || ||||||||||| ||||| || Sbjct 31549 GAGTTCAGCCCGTAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGACGCGC 31490 Query 73015 TCCCGGCATCCAT 73027 ||| ||| ||||| Sbjct 31489 TCCTGGCGTCCAT 31477 Score = 93.3 bits (102), Expect = 6e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || |||||| ||| | || || || ||||| || | Sbjct 33720 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCAATGTGGATGT 33661 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 33660 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCACGGTCGGCTGCCATCTTGAGCACGGTCT 33601 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 71036 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 33600 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 33552 >seq30 Length=3550406 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || || ||||| || || || ||||| |||| || || || | Sbjct 771459 CACTGAACACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCAGCGAGGA 771400 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 || || || ||||||| || || |||||| || | ||||||||||||||||||| Sbjct 771399 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 771340 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || ||||| || |||||| | || | || ||||| || ||||| Sbjct 771339 GCTCCACCGTGGTGACTCCACTGTACAGACCCTGGATCACTTTCAT 771294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671086398123440