Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17]
6,294 sequences; 619,300,777 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq55 91.5 8e-14
seq126 86.0 3e-12
seq79 84.2 1e-11
seq22 84.2 1e-11
seq1021 82.4 4e-11
seq25 82.4 4e-11
seq18 82.4 4e-11
>seq55
Length=2100046
Score = 91.5 bits (100), Expect = 8e-14
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| ||| ||||||| | |||||||||| ||||||| ||||||||||||| ||||
Sbjct 540898 AAAAGCAACTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 540839
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| |||||||||||||| ||||
Sbjct 540838 TCTAACCAACTGAGCTAACCGGCC 540815
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| ||| ||||||| | |||||||||| ||||||| ||||||||||||| ||||
Sbjct 540176 AAAAGCAACTTGGCCCGTACGGGGATCGAACCCACGACCTTGGCGTTATTAGCACCACGC 540117
Query 11506 TCTRACCAACTGAGCTAA 11523
||| ||||||||||||||
Sbjct 540116 TCTAACCAACTGAGCTAA 540099
Score = 86.0 bits (94), Expect = 3e-12
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| ||| |||||| | |||||||||| ||||||| ||||||||||||| ||||
Sbjct 541372 AAAAGCAACGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 541313
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| |||||||||||||| ||||
Sbjct 541312 TCTAACCAACTGAGCTAACCGGCC 541289
Score = 86.0 bits (94), Expect = 3e-12
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| | |||||||| | |||||||||| ||||||| ||||||||||||| ||||
Sbjct 541769 AAAACCTCATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 541710
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| |||||||||||||| ||||
Sbjct 541709 TCTAACCAACTGAGCTAACCGGCC 541686
Score = 86.0 bits (94), Expect = 3e-12
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| | |||||||| | |||||||||| ||||||| ||||||||||||| ||||
Sbjct 546847 AAAACCTCATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 546788
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| |||||||||||||| ||||
Sbjct 546787 TCTAACCAACTGAGCTAACCGGCC 546764
Score = 86.0 bits (94), Expect = 3e-12
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
|||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||
Sbjct 1359039 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 1359098
Query 11514 ACTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 1359099 ACTGAGCTAACCGGCC 1359114
Score = 84.2 bits (92), Expect = 1e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506
||| ||| |||||| | |||||||||| ||||||| ||||||||||||| |||||
Sbjct 527166 AAAGCAAGCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCT 527107
Query 11507 CTRACCAACTGAGCTAATGGGCC 11529
|| |||||||||||||| ||||
Sbjct 527106 CTAACCAACTGAGCTAACCGGCC 527084
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 543581 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 543522
Query 11528 CC 11529
||
Sbjct 543521 CC 543520
>seq126
Length=744024
Score = 86.0 bits (94), Expect = 3e-12
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 13107 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 13048
Query 11528 CCGT 11531
||||
Sbjct 13047 CCGT 13044
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 10376 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 10317
Query 11528 CC 11529
||
Sbjct 10316 CC 10315
>seq79
Length=1409952
Score = 84.2 bits (92), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| || ||||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 454619 AAAAAGCAG-TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 454677
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| ||||
Sbjct 454678 CTCTAACCAACTGAGCTAACCGGCC 454702
>seq22
Length=3996094
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 513603 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 513544
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 513543 CTGAGCTAACCGGCC 513529
>seq1021
Length=90897
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 24 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 83
Query 11528 CC 11529
||
Sbjct 84 CC 85
>seq25
Length=3885898
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 3216436 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3216377
Query 11528 CC 11529
||
Sbjct 3216376 CC 3216375
>seq18
Length=4850798
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 4595721 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4595780
Query 11528 CC 11529
||
Sbjct 4595781 CC 4595782
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261471141500344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |