Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq39 147 3e-30 seq24 107 3e-18 >seq39 Length=2776481 Score = 147 bits (162), Expect = 3e-30 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794 ||| | ||||| || || || ||| ||| ||||| |||||||| |||||||| || Sbjct 1662012 GCAGTGTTGACAATGTTGAAGCCGACGCTTCCTCCGAATGTGCTGGGCTTCCAGTACTCC 1661953 Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854 |||||||||||| ||| |||| | ||||||||||||| | || ||||||| ||| | Sbjct 1661952 GGGGAGCAGATGGGGTTTCCCATTAAGCCTTTGAGGGAATAAGGGGCCCCCATCTCCACC 1661893 Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914 ||| | || || |||||| |||| || | ||| || || ||||| | || | ||| | | Sbjct 1661892 ATGGTTTCCCCAAAGATGCCGTTAGGCCTGGGTTTCTCTACCAACAGACCTGGGTAGAGC 1661833 Query 8915 TCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 |||||||| || |||| |||||| | || ||| | || || || || || |||||| Sbjct 1661832 TCCACAGCGTCAATGTTTCCGTACATCTCCTCGAGCACTGCGGCCATCTCTTTCTCTCCT 1661773 Query 8975 G 8975 | Sbjct 1661772 G 1661772 Score = 129 bits (142), Expect = 8e-25 Identities = 181/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| || |||||||| || || ||||||| |||| || || || Sbjct 1660250 TCACCAATCAGGATGAGCCGTGTGGTCTGGAAGAGCCTTTCGTCATTCCAGTCAGGGTGA 1660191 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | |||| ||||| ||||| | ||||||||||| |||||||| || ||||||||| Sbjct 1660190 ACCTCCTTCAACACATCACACACCCGGTTGTGTTCCCGCAGCCAGATGGTGGCGTACATC 1660131 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || ||||| || |||||||| |||||||| ||||| ||||| | || | || || Sbjct 1660130 ATCAGACCGGGGACCAGGCCGAAAGCCTCATGACCCACAGCGAAGCGGTGAGAGTCAGGG 1660071 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||||| ||| ||||| || ||| || | || | ||||| || | ||| Sbjct 1660070 ACATGAGGAGGGTAGTGCATGTCAACACCGACTTCCTGTACTGTTGGGGGGTAAACTTCT 1660011 Query 9850 CCGTCAATAATCTG 9863 || || | ||||| Sbjct 1660010 CCATCTACGATCTG 1659997 >seq24 Length=3976164 Score = 107 bits (118), Expect = 3e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 ||||| || |||||||| || |||||||| | || |||||||| ||| ||| ||| Sbjct 729231 TCTCCCCCAAAGGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATCGGGTTTCCCAACAGG 729172 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 ||||| || || || ||||| |||| || | ||||||||||| || ||| ||| | Sbjct 729171 CCTTTCAGAGAGAAGGGAGCACCCATTTCCACCATGCTCTCACCAAATATGCTGTTACTA 729112 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | || |||| | || || | ||| ||||||| ||| |||||||| ||||| || Sbjct 729111 CGTGTTTTCTCCAGTATGACGCCTGGGTAAAACTCCAAAGCATCGATGTCACCGTAGAG 729053 Score = 86.0 bits (94), Expect = 9e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || ||||| |||| | ||||| || || || || || ||| |||||| Sbjct 723773 TCACCAATGATGATCAGTCTGGCAGTCTGGAAGAGCTGCTCATCGTCCCAGGTAGGATGT 723714 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| ||||| | || || ||||||||||| || | ||||| | || |||||||| Sbjct 723713 TCTGCCTTCAGGATGTCACAGACTCTGTTGTGCTCTCGCAGCCAAAGGGTGGCGTACATG 723654 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||||| |||| | |||| | ||| || || | |||||||| | | | || Sbjct 723653 GTGAGACCCGGCAAGATGCCATATATCTCCTGCCCAATGACCAGACGCTTCTCTGGAGGG 723594 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | |||||| | ||||||||| | ||||| || | ||| || ||||| ||| Sbjct 723593 ACATGTTCAGGATACACCATGTGCACAGGCACATCAGATACTGTGGGAGGGTACATCTCA 723534 Query 9850 CC 9851 || Sbjct 723533 CC 723532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708469056811360