Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17]
6,294 sequences; 619,300,777 total letters
Query= NC_006552.1
Length=65195
Score E
Sequences producing significant alignments: (Bits) Value
seq120 289 1e-73
>seq120
Length=812315
Score = 289 bits (320), Expect = 1e-73
Identities = 581/841 (69%), Gaps = 39/841 (5%)
Strand=Plus/Minus
Query 10068 TTCTTCGCCGCCCAGTGCTACCAGCAGCTCGGGGATGAATT-GCTGGAAGGTGAGCATCA 10126
||||||||||||||| || |||||||||| || | ||||| ||| | |||||||||||
Sbjct 44167 TTCTTCGCCGCCCAGGGCATCCAGCAGCTCCGGAACGAATTCGCTC-AGGGTGAGCATCA 44109
Query 10127 TCAGGACGAAGCTGGCGTCGGCCTGTGC--GAAC-TCGTCGGAATCCTTACCAGCGTCGT 10183
|||| ||||||||||| ||| || | || | |||||| ||| ||| || |
Sbjct 44108 TCAGAACGAAGCTGGCATCGAGTTGGGATAGAGCATCGTCG----CCT--CCATCGCGCT 44055
Query 10184 CCAGTGCCCGCTCCTGCAGCAGGTCGTCGAAGCGGAGGCTGCGGATCACCAGACCCTCGT 10243
| ||| | ||||||||||| || ||||||||||| | ||||| || ||||
Sbjct 44054 CG---GCCTGTTCCTGCAGCAGATCTTCGAAGCGGAGACCGCGGACGGTGAGTTTTTCGT 43998
Query 10244 CGAGTACGAAGTAGAGGTCTTTCTTCCAGGCGAGAGCGAGCTTGGTGACGCTCTTACCTG 10303
| || ||| ||| | | |||||||| | | ||| |||||| ||| ||||
Sbjct 43997 CCAGGGTGAAACTGAGTTTGTCGTTCCAGGCCAACGACAGCCGCGTGACGAGCTTGCCTG 43938
Query 10304 AGTCGAGGTGCTGGCGGATCACGTCGCTGGTCAGGTCCTGGTGTTTG--GCGGT-GATGC 10360
| ||||| | ||||| ||||||||||||||||||| ||||| ||| | |||
Sbjct 43937 CGGAAAGGTGGTTCTGGATCTCGTCGCTGGTCAGGTCCTGACGTTTGCAGCGAACGGTGC 43878
Query 10361 TGCCTTGCTCGTCGGTGTCGCGGAGCAGGGCGCCGTCGCACAGCCAGAAGTCGCCACCCG 10420
||||| ||||| |||||||| ||| ||| || | ||| |||| || | |
Sbjct 43877 CGCCTTCCTCGTGGGTGTCGCTTAGCT---CGCAGTTGTCCAGGACGAAGAATCCTTC-G 43822
Query 10421 CATTAGTTTCTTGGCTTCGCAGCCACTCGGTCATGGTTGCCGTCGGCGAAACCTTGGTTG 10480
| | | | ||| | |||||| ||||||| || || | || | ||||| |
Sbjct 43821 C--TGGCCTGCTGGTTCTTCAGCCAATCGGTCAAAGTGGCACTGGGGGCCACCTTCACCG 43764
Query 10481 CGATCGGTCGGACGGGGAGAGAGCCCAGGGCTTCGCGCAAGGTCGACAGCAGATCCTCGG 10540
| |||||||| || || |||||||||| |||||||| | ||||| || ||||| ||||
Sbjct 43763 CTATCGGTCGTACCGGCAGAGAGCCCACAGCTTCGCGAAGTGTCGAGAGGAGATCTTCGG 43704
Query 10541 CGGCCTTCGCCGTGGCGGTGTCCACGATCACCAGGCCTTGCGCCGGCATGATTGCGGCGA 10600
| || || | | || |||||| | ||| || || || ||| ||||||
Sbjct 43703 CCTTTTTGGCGCTCGACTCGTTCACGATGATCAGTCCCAAAGCTGGAGCGATCGCGGCGT 43644
Query 10601 AGGTGCGCTTGCG--GCGGGTGAACGCGCGCGGTAGGAGGGTCTGGACGATCTCGTCCTT 10658
|||| |||| |||| |||| || || || |||| | ||||||||| ||||| ||
Sbjct 43643 AGGTAG--TTGCTTTGCGGATGAAGGCCCGAGGGAGGAACGCCTGGACGATGTCGTCTTT 43586
Query 10659 CAACTGGTCGCGCTCTTTCTTGTAGACCTTGCG---CTGCTGGGTTTCCTCGATCTCTTC 10715
| ||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 43585 GAGTTGGTCGCGCTCTTTCTTGTAGACCTTGCGGCTTTGCTCGGT---CTCGATCTCTTC 43529
Query 10716 GACCTTCTCCTTCAGTGCTTCGTTGACCACGCTGCCAGGCAGGATCTTCTCCTCCTTGCG 10775
|| |||||| ||| ||| || ||| |||||||| || ||||| ||||| || ||
Sbjct 43528 CACTTTCTCCGTCAATGCGTCACGGACGACGCTGCCGGGAAGGATGCGTTCCTCTTTCCG 43469
Query 10776 -GCAGCAGATCAGCCAGAATCCGTTCGCCTCGCGTACCAGCGGTG---CGTCACCCTTGC 10831
|| || | || |||| ||| | ||| | || ||||| | | ||||| ||||
Sbjct 43468 AGCCGC-CACTAGGTAGAAGCCGCTGCTTTCGTGCACGAGCGGAGCATCTTCACCTTTGC 43410
Query 10832 CGACCGGCGGCGCGAAGCCGTAGGTGGTCAACTCCTGGGAGGCGCAGG-GCGCGCTGGTT 10890
| | ||| || |||||||||||| || | || ||| | |||||| ||| ||||| |
Sbjct 43409 CCAGCGGAGGAATGAAGCCGTAGGTAGTGAGTTCTTGGCTGCCGCAGGCGCGAGCTGGCT 43350
Query 10891 T 10891
|
Sbjct 43349 T 43349
Score = 197 bits (218), Expect = 6e-46
Identities = 252/346 (73%), Gaps = 6/346 (2%)
Strand=Plus/Minus
Query 11165 CCGCCGAGCAGTTGCATGTTGCCGTTGAT---GTCGACCACTACCTCGGTGCTGTAGTGG 11221
||||||||||| || | ||| || | |||||| || | ||||||| ||||| |
Sbjct 48496 CCGCCGAGCAGCTGAAGTCGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGT 48437
Query 11222 TCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGG 11281
| | ||||| | || |||| ||||||||| || ||||||||| |||| ||||
Sbjct 48436 TTCACTCCGTCTTTTTCC---CACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGG 48380
Query 11282 GAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGG 11341
|| |||||||| || | | ||||||||||| | | ||| |||| ||| || |||
Sbjct 48379 CTCCCTTTTCGCAGATACTCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGG 48320
Query 11342 TGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTG 11401
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 48319 TGCCACTCGGTACGCTCCTGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTG 48260
Query 11402 GCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTTGCGTCTGGATCCTGG 11461
||||| | | | || || || || ||| |||||| | | | || || || |
Sbjct 48259 GCCAGGGTTATGTTCGTTACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCGCCG 48200
Query 11462 CCCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCATGG 11507
|| | |||||| || || || ||||| || || ||||||||||
Sbjct 48199 CCGGCGTTGCCGACGAGAATCACTTTGTTGACGCCTCGTGCCATGG 48154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 208483206417304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |