Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq120 289 1e-73 >seq120 Length=812315 Score = 289 bits (320), Expect = 1e-73 Identities = 581/841 (69%), Gaps = 39/841 (5%) Strand=Plus/Minus Query 10068 TTCTTCGCCGCCCAGTGCTACCAGCAGCTCGGGGATGAATT-GCTGGAAGGTGAGCATCA 10126 ||||||||||||||| || |||||||||| || | ||||| ||| | ||||||||||| Sbjct 44167 TTCTTCGCCGCCCAGGGCATCCAGCAGCTCCGGAACGAATTCGCTC-AGGGTGAGCATCA 44109 Query 10127 TCAGGACGAAGCTGGCGTCGGCCTGTGC--GAAC-TCGTCGGAATCCTTACCAGCGTCGT 10183 |||| ||||||||||| ||| || | || | |||||| ||| ||| || | Sbjct 44108 TCAGAACGAAGCTGGCATCGAGTTGGGATAGAGCATCGTCG----CCT--CCATCGCGCT 44055 Query 10184 CCAGTGCCCGCTCCTGCAGCAGGTCGTCGAAGCGGAGGCTGCGGATCACCAGACCCTCGT 10243 | ||| | ||||||||||| || ||||||||||| | ||||| || |||| Sbjct 44054 CG---GCCTGTTCCTGCAGCAGATCTTCGAAGCGGAGACCGCGGACGGTGAGTTTTTCGT 43998 Query 10244 CGAGTACGAAGTAGAGGTCTTTCTTCCAGGCGAGAGCGAGCTTGGTGACGCTCTTACCTG 10303 | || ||| ||| | | |||||||| | | ||| |||||| ||| |||| Sbjct 43997 CCAGGGTGAAACTGAGTTTGTCGTTCCAGGCCAACGACAGCCGCGTGACGAGCTTGCCTG 43938 Query 10304 AGTCGAGGTGCTGGCGGATCACGTCGCTGGTCAGGTCCTGGTGTTTG--GCGGT-GATGC 10360 | ||||| | ||||| ||||||||||||||||||| ||||| ||| | ||| Sbjct 43937 CGGAAAGGTGGTTCTGGATCTCGTCGCTGGTCAGGTCCTGACGTTTGCAGCGAACGGTGC 43878 Query 10361 TGCCTTGCTCGTCGGTGTCGCGGAGCAGGGCGCCGTCGCACAGCCAGAAGTCGCCACCCG 10420 ||||| ||||| |||||||| ||| ||| || | ||| |||| || | | Sbjct 43877 CGCCTTCCTCGTGGGTGTCGCTTAGCT---CGCAGTTGTCCAGGACGAAGAATCCTTC-G 43822 Query 10421 CATTAGTTTCTTGGCTTCGCAGCCACTCGGTCATGGTTGCCGTCGGCGAAACCTTGGTTG 10480 | | | | ||| | |||||| ||||||| || || | || | ||||| | Sbjct 43821 C--TGGCCTGCTGGTTCTTCAGCCAATCGGTCAAAGTGGCACTGGGGGCCACCTTCACCG 43764 Query 10481 CGATCGGTCGGACGGGGAGAGAGCCCAGGGCTTCGCGCAAGGTCGACAGCAGATCCTCGG 10540 | |||||||| || || |||||||||| |||||||| | ||||| || ||||| |||| Sbjct 43763 CTATCGGTCGTACCGGCAGAGAGCCCACAGCTTCGCGAAGTGTCGAGAGGAGATCTTCGG 43704 Query 10541 CGGCCTTCGCCGTGGCGGTGTCCACGATCACCAGGCCTTGCGCCGGCATGATTGCGGCGA 10600 | || || | | || |||||| | ||| || || || ||| |||||| Sbjct 43703 CCTTTTTGGCGCTCGACTCGTTCACGATGATCAGTCCCAAAGCTGGAGCGATCGCGGCGT 43644 Query 10601 AGGTGCGCTTGCG--GCGGGTGAACGCGCGCGGTAGGAGGGTCTGGACGATCTCGTCCTT 10658 |||| |||| |||| |||| || || || |||| | ||||||||| ||||| || Sbjct 43643 AGGTAG--TTGCTTTGCGGATGAAGGCCCGAGGGAGGAACGCCTGGACGATGTCGTCTTT 43586 Query 10659 CAACTGGTCGCGCTCTTTCTTGTAGACCTTGCG---CTGCTGGGTTTCCTCGATCTCTTC 10715 | ||||||||||||||||||||||||||||| |||| ||| |||||||||||| Sbjct 43585 GAGTTGGTCGCGCTCTTTCTTGTAGACCTTGCGGCTTTGCTCGGT---CTCGATCTCTTC 43529 Query 10716 GACCTTCTCCTTCAGTGCTTCGTTGACCACGCTGCCAGGCAGGATCTTCTCCTCCTTGCG 10775 || |||||| ||| ||| || ||| |||||||| || ||||| ||||| || || Sbjct 43528 CACTTTCTCCGTCAATGCGTCACGGACGACGCTGCCGGGAAGGATGCGTTCCTCTTTCCG 43469 Query 10776 -GCAGCAGATCAGCCAGAATCCGTTCGCCTCGCGTACCAGCGGTG---CGTCACCCTTGC 10831 || || | || |||| ||| | ||| | || ||||| | | ||||| |||| Sbjct 43468 AGCCGC-CACTAGGTAGAAGCCGCTGCTTTCGTGCACGAGCGGAGCATCTTCACCTTTGC 43410 Query 10832 CGACCGGCGGCGCGAAGCCGTAGGTGGTCAACTCCTGGGAGGCGCAGG-GCGCGCTGGTT 10890 | | ||| || |||||||||||| || | || ||| | |||||| ||| ||||| | Sbjct 43409 CCAGCGGAGGAATGAAGCCGTAGGTAGTGAGTTCTTGGCTGCCGCAGGCGCGAGCTGGCT 43350 Query 10891 T 10891 | Sbjct 43349 T 43349 Score = 197 bits (218), Expect = 6e-46 Identities = 252/346 (73%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 11165 CCGCCGAGCAGTTGCATGTTGCCGTTGAT---GTCGACCACTACCTCGGTGCTGTAGTGG 11221 ||||||||||| || | ||| || | |||||| || | ||||||| ||||| | Sbjct 48496 CCGCCGAGCAGCTGAAGTCGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGT 48437 Query 11222 TCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGG 11281 | | ||||| | || |||| ||||||||| || ||||||||| |||| |||| Sbjct 48436 TTCACTCCGTCTTTTTCC---CACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGG 48380 Query 11282 GAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGG 11341 || |||||||| || | | ||||||||||| | | ||| |||| ||| || ||| Sbjct 48379 CTCCCTTTTCGCAGATACTCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGG 48320 Query 11342 TGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTG 11401 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 48319 TGCCACTCGGTACGCTCCTGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTG 48260 Query 11402 GCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGGGTAGATCTTGCGTCTGGATCCTGG 11461 ||||| | | | || || || || ||| |||||| | | | || || || | Sbjct 48259 GCCAGGGTTATGTTCGTTACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCGCCG 48200 Query 11462 CCCAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCATGG 11507 || | |||||| || || || ||||| || || |||||||||| Sbjct 48199 CCGGCGTTGCCGACGAGAATCACTTTGTTGACGCCTCGTGCCATGG 48154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208483206417304