Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq131 210 3e-50 seq89 205 1e-48 seq635 201 2e-47 seq30 190 3e-44 >seq131 Length=717452 Score = 210 bits (232), Expect = 3e-50 Identities = 185/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 505068 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 505127 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| |||||||||||||||||| |||| || || |||| || |||| Sbjct 505128 CCGCCGTCTGGCTCGCCGTGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 505187 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 505188 TCGTGGTGTGTTGAAGGTTTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGA 505247 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||| || | ||||| || || |||||||| | || ||||| |||| Sbjct 505248 GCACGCCAAGAGAAAGACCGTGACTGCCATGGATGTGGTGTATGCTCTGAA 505298 Score = 210 bits (232), Expect = 3e-50 Identities = 185/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 525120 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 525179 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| |||||||||||||||||| |||| || || |||| || |||| Sbjct 525180 CCGCCGTCTGGCTCGCCGTGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 525239 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 525240 TCGTGGTGTGTTGAAGGTTTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGA 525299 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||| || | ||||| || || |||||||| | || ||||| |||| Sbjct 525300 GCACGCCAAGAGAAAGACCGTGACTGCCATGGATGTGGTGTATGCTCTGAA 525350 Score = 190 bits (210), Expect = 3e-44 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 547426 CGCTAAGCGTCATCGTAAAGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCGGCTAT 547485 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||||||| ||||| || |||||| |||| || | |||| || |||| Sbjct 547486 CCGCCGACTGGCTCGTCGCGGTGGTGTTAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 547545 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | || | ||||| ||| ||| |||| |||||| || || ||||| Sbjct 547546 CCGTGGTGTGCTTAAAGTTTTCCTGGAGAACGTCATCCGTGATGCCGTCACTTACACCGA 547605 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | ||||| || |||| | ||||| Sbjct 547606 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAGAGGCAAGG 547665 Query 16672 CCG 16674 ||| Sbjct 547666 CCG 547668 Score = 187 bits (206), Expect = 4e-43 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 562042 CGCTAAGCGTCATCGTAAAGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCGGCTAT 562101 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||||||| ||||| || |||||| |||| || | |||| || |||| Sbjct 562102 CCGCCGACTGGCTCGTCGCGGTGGTGTTAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 562161 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | || | ||||| ||| ||| |||| |||||| || || ||||| Sbjct 562162 CCGTGGTGTGCTTAAAGTTTTCCTGGAGAACGTCATCCGTGATGCCGTCACTTACACCGA 562221 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| |||||| |||||||| | ||||| || |||| | ||||| Sbjct 562222 GCATGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAGAGGCAAGG 562281 Query 16672 CCG 16674 ||| Sbjct 562282 CCG 562284 Score = 185 bits (204), Expect = 1e-42 Identities = 212/284 (75%), Gaps = 1/284 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | |||||| ||||||||||| ||||| |||||||| ||||| Sbjct 551137 CGCTAAGCGCCACCGTAAAGTTCTTCGTGATAACATCCAGGGAATTACCAAGCCGGCTAT 551078 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||||||| ||||| ||||||||| |||| || | |||| || |||| Sbjct 551077 CCGCCGACTGGCTCGTCGCGGTGGTGTCAAGCGTATCTCAGGTCTCATCTACGAGGAGAC 551018 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| |||| |||||| || || || || Sbjct 551017 CCGTGGTGTCCTCAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACTTACACAGA 550958 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| |||||| |||||||| | ||||| || |||| | || || Sbjct 550957 GCATGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAGAGGCAGGG 550898 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCAAACTT 16715 ||| | | || || || || ||||| | || || || |||| Sbjct 550897 CCGCACTCTGTACGGCTTCGGCGGTTAAACATC-AACCAGACTT 550855 >seq89 Length=1204020 Score = 205 bits (226), Expect = 1e-48 Identities = 184/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 847454 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 847513 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| |||||||||||||||||| |||| || || |||| || |||| Sbjct 847514 CCGCCGTCTGGCTCGCCGTGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 847573 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| | || || ||| ||| |||| |||||| || ||| ||||| Sbjct 847574 TCGTGGTGTGTTGAAGGTTTTTCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGA 847633 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||| || | ||||| || || |||||||| | || ||||| |||| Sbjct 847634 GCACGCCAAGAGAAAGACCGTGACTGCCATGGATGTGGTGTATGCTCTGAA 847684 >seq635 Length=169019 Score = 201 bits (222), Expect = 2e-47 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| |||||||||||||| ||||| Sbjct 121858 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTAT 121917 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| |||||||||||||||||| |||| || || |||| || |||| Sbjct 121918 CCGCCGTCTGGCTCGCCGTGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 121977 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| |||||| | ||||| ||| ||| |||| |||||| || || ||||| Sbjct 121978 TCGTGGTGTGTTGAAGGTTTTCCTGGAGAACGTCATCCGTGATGCCGTCACTTACACCGA 122037 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||| || || | ||||| || || |||||||| | || ||||| |||| Sbjct 122038 GCATGCCAAGAGAAAGACCGTGACTGCCATGGATGTGGTGTATGCTCTGAA 122088 >seq30 Length=3550406 Score = 190 bits (210), Expect = 3e-44 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||||||||||||||| || || || Sbjct 457113 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAAGGAATCACCAAACCCGCCAT 457172 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| |||||||| ||||||||| |||| || | ||||||| |||| Sbjct 457173 CCGCCGTCTGGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGGTCTCATCTATGAGGAGAC 457232 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| | ||| |||| || ||| ||| || | |||||| | || ||||| Sbjct 457233 CCGTGGTGTTCTCAAGGTCTTTCTGGAGAACGTCATTCGTGATGCCGTTACTTACACCGA 457292 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| |||||| ||||||| | ||||| || |||| | || || Sbjct 457293 GCACGCTAAGAGAAAGACCGTCACCGCCATGGACGTGGTCTACGCTCTGAAGAGACAGGG 457352 Query 16672 CCG 16674 ||| Sbjct 457353 CCG 457355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069445351742