Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq67 535 5e-147 seq30 87.8 2e-12 >seq67 Length=1635559 Score = 535 bits (592), Expect = 5e-147 Identities = 1317/1980 (67%), Gaps = 33/1980 (2%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCA-TAATCCTATTCTTGATCTCATCATTCCATAATTTTC 62301 |||||||||||| | ||||| | | | | ||||| ||||| || ||||| | | Sbjct 33458 CTGAATGGATCCGTTGT-TGCCAATGAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCC 33400 Query 62302 TCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTC 62361 |||| || | || | || ||||| ||||| || | ||||| |||||||| | || | Sbjct 33399 TCTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCC 33340 Query 62362 TCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAG 62421 | || ||||| || || ||||| || | ||| | ||||| || || |||| || || | Sbjct 33339 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTG 33280 Query 62422 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 62481 | || || || || ||||| || |||| || || || || || | |||| | | || Sbjct 33279 CTGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGA 33220 Query 62482 TTTTATCTTTTAG-AGGTTCCCAATTCCAA-AGATCCGACGGTACAACNNNNNNNNNNNN 62539 | || || || || || |||| | ||||| ||||| | || | | Sbjct 33219 TCTTTTCCTTCAGCAGCTTCC--AGTCCAACAGATCGGTGGG--CGTCTTCTCCCACATG 33164 Query 62540 NNNT--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCC 62597 | || || || || || ||| | || ||| | || || ||||| || || | Sbjct 33163 TCGTACTGGAGGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGC 33104 Query 62598 TTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTC 62657 | | || || || || |||||||| | || |||| || ||||| || ||||| | Sbjct 33103 TCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGG 33044 Query 62658 TTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCC 62717 | || || || || || |||| ||||| || ||| | || || || || ||| Sbjct 33043 ATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCC 32984 Query 62718 GCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT 62777 || || |||||||| || || || || || || || | ||| || || | || ||||| Sbjct 32983 GCCAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTCG 32924 Query 62778 GGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACC 62837 || | ||||| | ||||| || || || || || | ||||||||||| |||||| | Sbjct 32923 GGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGACTTTGGTC 32864 Query 62838 AC--ATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACATGTTCAAGG 62892 || || || ||||| ||| ||||| ||| || | || ||||||| | | Sbjct 32863 ACAGATGCT--AGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGCG 32806 Query 62893 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 62952 ||| || ||||||||||| || |||||||||| | | |||| | || || | Sbjct 32805 CAATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTG 32746 Query 62953 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63012 |||| || || || | ||||| || || | ||| || || || |||||| ||| || | Sbjct 32745 TGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGG 32686 Query 63013 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63072 | || || || || ||| | || ||||| ||||| |||| || || || || || | || Sbjct 32685 CGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCGTGCC 32626 Query 63073 AGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTAT--AGTGTATA 63130 | || ||||||| | | | ||| |||| || | || ||| |||||| | Sbjct 32625 ACACCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGA 32566 Query 63131 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACAT 63190 || || ||||| || |||||| | ||||| || ||||| |||| |||||||| Sbjct 32565 GCTTC--TCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACAT 32508 Query 63191 CAACGACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248 || ||||| ||| || | ||| ||||| ||||| || | ||||| ||||| || Sbjct 32507 CAGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGG 32450 Query 63249 GC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || || ||| || ||||||| || || ||||| |||||||| ||||| || || || || Sbjct 32449 GCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAG 32391 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 ||| | | | ||| | |||||||| |||| ||| ||||| | |||| || | ||| Sbjct 32390 GAAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTT 32331 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 ||| || ||||| || | || | || ||||| || |||||||||| ||| || | | Sbjct 32330 GTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAA 32271 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63487 |||||||| | || || || |||| || ||||| || | | | || || | Sbjct 32270 CCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTGATCTGATGCAGCTGAC 32211 Query 63488 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63547 | | ||| ||||| || ||| || ||||| | || || | || | ||||| || Sbjct 32210 AGCCACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTA 32151 Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607 ||| || || ||||| || || ||||| || || || ||||| |||| || | | Sbjct 32150 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCT 32091 Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667 | || || ||||| || | ||||| || ||||| || ||||| || || || || || Sbjct 32090 GTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAG 32031 Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727 ||||| |||||||| |||| ||| || ||| | || || || || | || | ||| Sbjct 32030 GTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTCAT 31971 Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787 | ||||||||| |||| ||| | | ||| ||| || |||| || |||||| || Sbjct 31970 GAGCATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTC 31911 Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 || ||| || || ||||| ||||||| || ||||| || ||| |||| || | ||||| Sbjct 31910 CAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCACGGTCGAAAATGATGGCGGAGTT 31851 Query 63848 GAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT 63906 ||| || || | | | || || || | || | ||| || || || ||||| Sbjct 31850 GAGGCGGTCTTTGTTCTCCTGGACAATGTCGAGCGT-CTCCTTGGAGATCATGGGAGA-- 31794 Query 63907 GTTTCCCATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 63964 || | | || | || || ||||||||| | | ||||||||||| || || || | Sbjct 31793 GTGGCGTTTGTTCAAGGGGTTGACATAGTTGTACAGGTCCTCCATCACGTCGCTGAACAC 31734 Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 || || || || ||||| || ||||| ||||| || | || || || || ||||| || Sbjct 31733 CTTCTTGGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGAGCAGCGAGGATTGCATAGTC 31674 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64084 || |||| || || |||||| || || || || ||||| ||||| | || || || Sbjct 31673 GGGGTGTTTGGTTGTGAGAGTGGCGGCGATCTCAGCCGCCAGCGTGTCGAGCTCCACGGT 31614 Query 64085 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATG 64144 || || || | || | || ||||| |||||||| | || | ||||| | | Sbjct 31613 GGTGACGCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCTGGATCCACAAA 31554 Query 64145 ATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204 || | ||| | || || || | || || || || ||||||||||| |||||||| Sbjct 31553 GTCAGAGTTCAGCCCGTAGCACAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 31494 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || |||||| || |||| || || || ||||| | Sbjct 33720 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCAATGTGGATGT 33661 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || ||||||||||| || | ||| || ||||| || | | |||| Sbjct 33660 TCAGGGACTGGCTCTGGTCGATGAAGGCGCCACGGTCGGCTGCCATCTTGAGCACGGTCT 33601 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62230 | || | || ||||| | |||||||| | |||| | ||| ||||| Sbjct 33600 TCTGGGAGATCTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCTGG 33552 >seq30 Length=3550406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || || || ||||| || || || ||||| |||| || || || | Sbjct 771459 CACTGAACACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCAGCGAGGA 771400 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 || || || ||||||| || || |||||| || | || |||||||||||||||| Sbjct 771399 GTGCGTAGTCGGGATGTTTGGTGGTTAGAGTGGCGGCGGTCTCTGCTGCCAGAGTGTCCA 771340 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || ||||| || |||||| | || | || || || || ||||| Sbjct 771339 GCTCCACCGTGGTGACTCCACTGTACAGACCCTGGATCACTTTCAT 771294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622898189629040