Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq67 226 3e-54 seq331 105 6e-18 seq30 95.1 1e-14 >seq67 Length=1635559 Score = 226 bits (250), Expect = 3e-54 Identities = 969/1511 (64%), Gaps = 44/1511 (3%) Strand=Plus/Minus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 |||| |||| ||||||||| || | | || | || || | ||| ||| ||| Sbjct 33372 GATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 33313 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 ||| | ||||||||| ||||||||||| || || || | || |||||||| |||| Sbjct 33312 CTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAGGCCGTGGGCATCGGGGCCA 33253 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 || || || | || |||||| || ||| | |||||| ||| ||| ||| Sbjct 33252 GCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCA 33193 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || || ||| || ||||||||||||||||| | || |||| |||| | || Sbjct 33192 ACAGATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATCCCCTTGCTGACCGGAG 33133 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAG 145353 ||||| | | ||| ||| || | | || |||||||| ||||||||||| Sbjct 33132 AGCCTTCGTACGTCTCGTAGGGGCCG--AGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAG 33075 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 ||| || | || || ||||| ||||| |||| |||||| ||| || ||| || Sbjct 33074 GGCGGCGTAGTAGATGGTCTCAAAGATTTGGATGTTCAGCAGCTGCGCCTCGGGGCTTTC 33015 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 |||| |||| ||| | || ||||| || | || || | || | || || || Sbjct 33014 AAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCGATTCCTATTGG 32955 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGC--CG---ACTCGATAGGATATCGATTACGGTCG 145528 || || | ||||| | || ||| || ||| ||||| | ||| ||| Sbjct 32954 CCTGTGACGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAG-----TTAATCTCG 32900 Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTC-AAAGTC 145587 || || || |||||||||| || | || || || | | || | |||| |||||| Sbjct 32899 ATGATCTTGTTCAAGTTTCTGACAATGACTTTGGTCACA-GATGCTAGTTTTTTAAAGTC 32841 Query 145588 AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 ||| || | ||| | || | | |||| || || || |||| |||||| || Sbjct 32840 AAA---AGTCCGCTCAGGGGTGACGTACATGTTGAGCGCAATGGAGGCCAGATTACAGAC 32784 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGAT 145707 || ||| ||| || | |||||| ||||| || | ||| | ||||| | |||||| Sbjct 32783 CGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGAT 32724 Query 145708 GGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 || |||||||| ||||| || || || | |||||| ||||| ||||| ||||||||||| Sbjct 32723 TGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGG 32664 Query 145768 TCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGC---GCACGCAC 145824 || || || ||| | ||| | ||| |||| | ||||| || ||| Sbjct 32663 CGTACCGGTTTCTGTCTGGGACTCAATGAT---GGCGTGCCACACCTGCTGAGCCTTCAC 32607 Query 145825 CTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 | ||| | | ||||| | || ||| ||||||||| ||||||| | ||| Sbjct 32606 CACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACC 32547 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 | || ||| ||| |||||||||| |||||||||||||| ||||| | |||| Sbjct 32546 CCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCT 32487 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCT 146002 | || | || ||| ||||| || || | |||||| ||||| | | ||| | || || Sbjct 32486 TTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCT 32427 Query 146003 TTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGC 146062 ||| ||||| || |||| ||||| | || | | | | || |||| Sbjct 32426 CTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGC 32369 Query 146063 CACGGTTCAATATAGACGGCGAGGGCTCC---TTTTCGTTTGCCACCCTGGTCCACGTGA 146119 ||||| || | || | ||||| |||||| | || ||||| |||||||| || | | Sbjct 32368 CACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAA 32309 Query 146120 CGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTA 146179 || || ||||||| | || | || |||||| | | ||| | | |||||| || Sbjct 32308 CGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTG 32249 Query 146180 GAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCC 146238 | || | | || || | | ||| ||| ||| |||| || || ||| Sbjct 32248 CCGGCAATGTAGCTCCCTGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCAGCC 32189 Query 146239 GTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG-- 146296 | |||| || || ||| || | || || ||||||||||| || ||||| ||| Sbjct 32188 G-ACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTC 32130 Query 146297 CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAAC 146356 |||| ||| ||||||| ||||| | ||| ||| | | | || || || ||| Sbjct 32129 CTTC--ATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAG 32072 Query 146357 AACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGC 146415 | || || ||||| || || || || || | || || || || || || || Sbjct 32071 AGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCG-ACAGCAGGTTGTAGGTCTCAATGGC 32013 Query 146416 GTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCG 146475 | | ||||| | || ||||| | || || | |||||||||||| ||||| || Sbjct 32012 TGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTCATGAGCATGTGCTGGGGTCG 31953 Query 146476 CTCCGCCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGTATCCG 146533 || ||||||| || ||||| | || ||| ||| |||||| || ||| | || Sbjct 31952 TTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCG--CTCCAGAGTCTTGAAGCCA 31895 Query 146534 AAAAATTTGTA 146544 || || ||||| Sbjct 31894 AAGAAGTTGTA 31884 >seq331 Length=323222 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || |||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 7702 CCGCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 7761 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 7762 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 7821 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||||| | ||| | || || ||| ||||| Sbjct 7822 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 7881 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || || || || || ||||||||| Sbjct 7882 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATG 7929 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || |||||| || | || | ||| |||||||| || ||||| || ||| Sbjct 7474 CCGCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAG 7533 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 7534 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 7593 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||||| | ||| | || ||| ||| ||| | Sbjct 7594 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 7653 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || || || |||||||| Sbjct 7654 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 7700 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 131056 TTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGC 131115 ||||| ||| | |||||| || || ||||||||||| || |||| | | |||| Sbjct 12929 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGC 12988 Query 131116 TGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCG 131175 ||||| || || || ||||| ||||| ||||| ||| | | ||| | || ||| Sbjct 12989 TGGTCAGGGGGAATGCCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTGTCG 13048 Query 131176 GTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| ||||| || | ||| | ||| || || || || || || || |||||||||||| Sbjct 13049 CTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 13108 >seq30 Length=3550406 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| ||||| |||||||||| ||||| || ||||| | Sbjct 773352 TGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 773293 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || |||| ||||| || |||||||| ||||||||||| Sbjct 773292 TGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGG 773253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471975664392960