Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17]
6,294 sequences; 619,300,777 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq331 98.7 9e-16
>seq331
Length=323222
Score = 98.7 bits (108), Expect = 9e-16
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 25015 AGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC 25074
|||| ||||||| || ||||||| | || || ||| | ||||||||| |||
Sbjct 11487 AGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAGTGACACTATTGAGAATG 11428
Query 25075 TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTG 25134
| ||| || ||| || || ||||| ||||| |||||||| ||| || | || ||||
Sbjct 11427 TCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTG 11368
Query 25135 CCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCA 25194
||||||| ||| | ||||||| ||||| | ||| |||||||| || || || ||||
Sbjct 11367 CCGGCAAGCAACTGGAAGATGGCCGCACCCTCTCCGACTACAATATCCAGAAGGAGTCCA 11308
Query 25195 CGCTACA 25201
| || ||
Sbjct 11307 CCCTCCA 11301
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | ||||| || ||||||| | || || ||| | |
Sbjct 7928 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 7869
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| | ||| || ||| || || ||||| ||||| || |||||
Sbjct 7868 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 7809
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | ||||||| ||||| | ||| |||||
Sbjct 7808 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 7749
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || ||||| || ||
Sbjct 7748 ATCCAGAAGGAGTCCACCCTCCA 7726
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || ||||||| | || || ||| |
Sbjct 13107 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 13048
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || ||| ||||| | |||| ||| ||||| ||||| ||||| ||||||||
Sbjct 13047 GACACCATTGAGAATGTGAAGGCTAAAATTCAG-GACAAGGAAGGCATTCCCCCTGACCA 12989
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162
||| || | || ||||||||||| || | ||||||| |||||
Sbjct 12988 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCAC 12944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433294760221610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |