Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq331 190 4e-43 seq134 91.5 3e-13 seq77 87.8 3e-12 >seq331 Length=323222 Score = 190 bits (210), Expect = 4e-43 Identities = 175/219 (80%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || ||||||||||| |||||||| || | Sbjct 7483 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGG 7542 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || |||||||| |||||||||||| Sbjct 7543 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 7602 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || || || ||||| ||||||||| ||| |||||||| ||| | || || |||| ||| Sbjct 7603 TTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC-GCTGGGCTCAACCTCCAGGGT 7661 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || |||||||||||||| || |||||||| Sbjct 7662 GATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 7700 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || |||||||| || | Sbjct 7711 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 7770 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || || || |||||||| |||||||||||| Sbjct 7771 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 7830 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||||||| ||| |||||||| | || || || | |||| Sbjct 7831 TTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 7890 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| || || |||||||| Sbjct 7891 ATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 7928 Score = 147 bits (162), Expect = 4e-30 Identities = 142/180 (79%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 68283 TTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGT 68342 || || |||||||| || | |||||||| | |||||| ||||| || || || || || Sbjct 12929 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGC 12988 Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || ||||||||||||||||| ||||| || ||||| || ||| |||||||| Sbjct 12989 TGGTCAGGGGGAATGCCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTGTC- 13047 Query 68403 GCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | || || || | ||||||||| || || |||||||||||||| || |||||||| Sbjct 13048 GCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 13107 Score = 140 bits (154), Expect = 6e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || ||||| || || |||||||| || | Sbjct 11286 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGG 11345 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||||| ||||| || || || || || ||||| || |||||||||||| Sbjct 11346 CCATCTTCCAGTTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 11405 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| |||||||| ||| || ||||| || || || || | |||| Sbjct 11406 TTATCCTGGATCTTGGCCTTGACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTG 11465 Query 68424 ATGGTTTTTCCCGTGAGGGTCT 68445 ||||| || || || ||||||| Sbjct 11466 ATGGTCTTGCCGGTCAGGGTCT 11487 >seq134 Length=707179 Score = 91.5 bits (100), Expect = 3e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 9895 AGAAGTCTGCGTCAATTGCAAACACGTTGTC-GTCGG--CATTCATGACGCCCGCCTTCT 9951 ||||||||||||| | | || |||||| || || | |||||||||| | ||| Sbjct 318937 AGAAGTCTGCGTCCAGTCTGAAGGTGTTGTCCGTGGGTCCGGACATGACGCCCATCCTCT 318878 Query 9952 GGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCA 10011 ||||||| ||||| ||| |||||||||| ||| ||||| || |||||| ||||| Sbjct 318877 GGTACTCGCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCA 318818 Query 10012 TGAAGTCAAAGGGGTTCTC 10030 ||||||| || |||||||| Sbjct 318817 TGAAGTCGAACGGGTTCTC 318799 >seq77 Length=1416746 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 ||||||||||| ||||||||||||||||| ||||| ||||| ||| | || || || Sbjct 1353185 CCTTCCTTGTCCTGAATCTTTGCCTTGACATTTTCGATAGTGTC-GCTGGGCTCAACCTC 1353243 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || ||||| | ||||| ||||| |||||||| Sbjct 1353244 AAGGGTGATGGTCTTCCCCGTCAATGTCTTCACGAAGATCTGCAT 1353288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921549891357680