Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq331 89.7 4e-13 >seq331 Length=323222 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||| || ||| | || || |||||| || || || ||| Sbjct 7504 GTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 7563 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| || || ||||| || Sbjct 7564 GCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 7623 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || |||| ||| | || |||||||| || || Sbjct 7624 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 7683 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 7684 TTGACAAAGATCTGCAT 7700 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| || || || || || |||| || | ||| ||||| || ||||||||||| || Sbjct 12952 ATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTT 13011 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||| || || | | |||| ||||||| ||| ||||| || | ||| | Sbjct 13012 GTCCTGAATTTTAGCCTTCACATTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGAT 13071 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || ||||| || || || || ||||||||||||||| Sbjct 13072 GGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 13108 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| | || | || || | || | || || || || || |||||||| ||| Sbjct 7699 ATACCGCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 7758 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| || || || || || |||| || | ||| ||||| || Sbjct 7759 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGG 7818 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || ||||| || | | |||| |||||| ||| ||| Sbjct 7819 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCG 7878 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || |||||||| || || || ||||| ||||||||| Sbjct 7879 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATG 7929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420102172277928