Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq67 459 5e-124 seq30 104 4e-17 seq508 87.8 3e-12 seq134 87.8 3e-12 >seq67 Length=1635559 Score = 459 bits (508), Expect = 5e-124 Identities = 1074/1603 (67%), Gaps = 62/1603 (4%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || |||| | | ||||||| | | ||| | ||||||||||| ||| | |||| Sbjct 33451 GATCCGTTGTTGCCAATGAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCC---CTCTCC 33395 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||||| | |||||||||||| || || || | ||| Sbjct 33394 GTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGG 33335 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | ||||| ||| |||||||||| ||||| || ||| Sbjct 33334 GTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTG 33275 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || ||| || ||||||||||||||||| | ||| Sbjct 33274 GAGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTT 33215 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||| ||| || ||| || || |||||||| Sbjct 33214 TCCTTCAGCAGCTTCCAGTCCAACA-----GATCGGTGGGCGTCTTCT----CCCACATG 33164 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | |||||||||||| || ||| ||||| ||| |||||| ||| | Sbjct 33163 TCGTACTGGAGGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-G 33105 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | | | |||||||| |||||| | || ||||||||||||||||||||||| ||||| Sbjct 33104 CTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTG 33045 Query 244426 CTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGT 244484 |||||| | || | |||| | || || ||| | ||||| |||||| | | Sbjct 33044 GATGTTCA-GCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCAT 32986 Query 244485 CGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTT 244544 | |||| || || |||||||| || || || ||||| ||||||||||| | |||| Sbjct 32985 CCGCCAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTT 32926 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGA 244604 ||||||| || || ||||| ||||| | |||||| | ||| | ||| ||| Sbjct 32925 CGGGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTC---TGACAATG---- 32873 Query 244605 CGACGTCGGCCAGCAGCTGAAAGTCGT----ACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | || || ||| || ||| | | || | | ||| | | || Sbjct 32872 --ACTTTGGTCA-CAGATGCTAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTG------ 32822 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 || || |||||| || | | |||||| || ||||| || ||||| || | || Sbjct 32821 ---ACGTACATGTTGAGCGCAATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTG 32765 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||| | || || || ||||||||||| |||| ||||| |||||||| | ||| || Sbjct 32764 GTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGG 32705 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| |||||||||||| ||||| |||||| | ||| ||||| || |||| Sbjct 32704 TTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGG 32645 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG-CCTTGCCCTC 244899 | | | || | || ||| | | | |||||| ||| | || | || | ||||| Sbjct 32644 GACTCAATGATGGCGTGCCACACCTGCTGAGCCTTCACC-ACACGCTTGACCCTCCCCTC 32586 Query 244900 TGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG 244959 ||| || ||||| || ||| ||||| ||||| |||||| || ||||| Sbjct 32585 CTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGG 32526 Query 244960 GCACGACGCCGGGCACATGAGACTCCACTC---GCCGCCGTCCTTGACCCTCTGCATGAA 245016 ||| || ||||| ||| ||| || | || ||| || |||| |||||| Sbjct 32525 ACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAA 32469 Query 245017 GAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGT 245076 | ||| |||||||| ||||| | ||| ||||| |||| ||||||||| ||| || || Sbjct 32468 CAAGTCAGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGT 32409 Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 ||||||| ||||||||| |||||||| || |||| |||||| ||||||| ||| | || Sbjct 32408 GTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGC 32349 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGAT 245196 || ||| ||||| | |||||||| |||||||| || | | | |||| | | Sbjct 32348 GAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAAC 32289 Query 245197 GCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT- 245255 | ||| | || |||| ||||| |||| |||||| ||||| ||||| || |||| Sbjct 32288 TCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTA-GCTCCCTG 32230 Query 245256 TGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGC 245315 | |||| | ||||| | || || | ||| || || ||| ||||||||||| | Sbjct 32229 TTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCAC 32170 Query 245316 AGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGC 245375 | ||| | ||||| ||||| || |||||||| ||||||| |||||| |||| Sbjct 32169 ACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGC 32110 Query 245376 AGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAA 245435 || ||||||||| ||| || | | | | ||||| ||||| || ||||||||| | Sbjct 32109 AGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGA 32050 Query 245436 AGTAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGG 245494 | | | || ||| || | ||| |||| | |||||||||| | |||| Sbjct 32049 ACCA-CTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGG 31991 Query 245495 ATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGGG 245550 || | | ||||||||| |||||||||| ||| | || | || || Sbjct 31990 ATGCCAACAGAAACCCTCATGAGCATGTGCTGGGG----TCGTTCGGCCACTTTGCCGTT 31935 Query 245551 TCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| |||| |||||| ||||| || |||||||| |||||| Sbjct 31934 GATCTTCAGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAG 31892 >seq30 Length=3550406 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| ||||||| || | ||| ||| Sbjct 774301 ACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATG 774242 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || ||||| Sbjct 774241 GACTCGTTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGG 774182 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 774181 CTGTTCCTCACACCATGCCT 774162 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || ||||| ||||| ||||| ||| | |||||||||||||||| ||| || Sbjct 773353 GTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGG 773294 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||| ||| | |||||||| |||||||| |||||| Sbjct 773293 TTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATG 773258 Score = 93.3 bits (102), Expect = 8e-14 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG---TCGCGCTGGGC 244374 || ||||||||||||||| ||| ||||||| ||| || ||| || |||| || Sbjct 773911 CACCCCCTTGCTGACGGGAGAGCCGGCGTAGGTTTCGTAAGGGCCGAGCTC-CGCT--GC 773855 Query 244375 CAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCAT 244434 ||||| |||||| | || |||||||||| ||||| ||||| |||||| |||| | Sbjct 773854 CAGCTCACAGCTGGCCTCCAGGGCGGCGTGATAGATAGTCTCAAAGATCTGAATGTTGA- 773796 Query 244435 GTCGCGGGCCTTGCCGCAGGTGAAGGGGAT-GCCCATCATCATGAAGACGTCGGCCAGTC 244493 | || || ||| | | || |||| | ||||| |||||| | || ||||| | Sbjct 773795 GCAGCTGGGCTTCTTGGCTTTCAAATGGATAACGCATCAGGATGAAGGCATCAGCCAGAC 773736 Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 |||| || ||||| || || || ||||| ||| |||| || Sbjct 773735 CCTGGACACCGATTCCAATCGGCCTGTGGCGCATGTTTGA 773696 >seq508 Length=211378 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| | || || || | || || ||||| ||||||||||| ||| | ||||| Sbjct 169500 GGGGAGAGAATCGTGGCTTTCGCAGCAGTGGAGGGTATCTTCTTCTCAGGCTCATTCGCT 169559 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 |||||| ||||||||| ||| | | ||||| || || |||||||| || || || Sbjct 169560 GCCATCTATTGGCTCAAGAAGAGAGGGCTAATGCCTGGTCTTACCTTCTCCAATGAGCTG 169619 Query 42816 ATCAGCAGGGACGAGG 42831 || |||||||| |||| Sbjct 169620 ATTAGCAGGGATGAGG 169635 >seq134 Length=707179 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || ||||||| ||||||||||| || |||||||| Sbjct 318804 CCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 318863 Query 43130 CGTCGCCGACTACCAG 43145 |||| ||| |||||| Sbjct 318864 GGTCGGCGAGTACCAG 318879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944264904113440