Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17]
6,294 sequences; 619,300,777 total letters
Query= NC_009382.1
Length=38760
Score E
Sequences producing significant alignments: (Bits) Value
seq2742 141 2e-29
>seq2742
Length=6849
Score = 141 bits (156), Expect = 2e-29
Identities = 433/660 (66%), Gaps = 31/660 (5%)
Strand=Plus/Minus
Query 4656 GTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGTTCGCTGTACTCCAGGCGCAG 4715
||||||||| |||||||| ||| | |||| |||| ||||||||| ||||
Sbjct 1782 GTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAG 1723
Query 4716 CTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGCATCCTCCACCGTCACGATTTG 4775
| || |||||||||||||||||||||||| || || || | | ||| | || |
Sbjct 1722 GCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTT 1663
Query 4776 GCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCGAAGCGCGGCGTGGCTCAGGTCGA- 4834
||||||||| ||||||| ||| | |||| | | | | || | ||| || | |
Sbjct 1662 GCGCCACTGCCCGTCCGGGCACAACGCGCCGGCATGGATCTGCGCTTCGCT--GGGCCAC 1605
Query 4835 -GCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCCGGACCAGAACGGA 4893
|| | || | | ||| | ||||| | | |||| |||||| |||| |||||
Sbjct 1604 GGCCCGGCCT-TCTTTCC--GCGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGA 1548
Query 4894 TAGGCCTCATGCG---ACAAGCTGGACGGCGTGGAGAAGTAGGTCTGACGCCAGTGCTTG 4950
|| |||| |||| | |||| |||||||||||||||||| | ||||| | |||
Sbjct 1547 TATGCCTGGTGCGTTACCGCGCTG---GGCGTGGAGAAGTAGGTCAGGCGCCACT--TTG 1493
Query 4951 --TGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGCGGCACCCAGAAGT 5008
|| ||||| || ||| ||| | |||| | |||||| || | ||||||
Sbjct 1492 CATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACA 1433
Query 5009 ATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCGTTCGTGCCGAGAA 5068
||| |||| ||| | || |||||| || |||||| ||| | |||||| |||||
Sbjct 1432 CTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAA 1373
Query 5069 -----AGT-------AGAGCGTGGCGCCGTTGGGCAGCACCATCGGATCGCCCTTCAGCT 5116
||| | || || || | ||| || | || |||| ||| |||||
Sbjct 1372 ACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCT 1313
Query 5117 CGATCCCGGCCGCGTCCTTGGCGAACTGGATGATGTA-TTGCTTGAAGACGTGCGCCTGC 5175
|||| || | | | ||||||| || |||||| ||| ||| || | | |||
Sbjct 1312 CGATATCGAACCATTGCGCGGCGAACGCGACGATGTAGCTGC-GGAACACTTCGGACTGG 1254
Query 5176 GCCTTGCTGGCCGATAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCGATGAACGCC 5235
|| ||| || || ||||||||||||||| ||||| || ||||| ||||||||
Sbjct 1253 GCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCT 1194
Query 5236 TCGCGTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCGGATGCGC 5295
||| |||||||| | ||| |||||||| || ||| || | | |||||| |||
Sbjct 1193 TCGGCGGCGAAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATATGGCGGATCCGC 1134
Score = 84.2 bits (92), Expect = 5e-12
Identities = 155/223 (70%), Gaps = 16/223 (7%)
Strand=Plus/Minus
Query 4168 ATGGACATGAACGACGCGGCGAAGTCCGTCCAGCCGGCGTCGAACTCCAGCCTGCCCTTG 4227
|| |||| ||||| ||| |||| || ||||| ||||| || | || | ||| ||||
Sbjct 2264 ATCGACAGGAACGCCGCCGCGACCTCGGTCCAACCGGCATCCCATTCGA---TGCGCTTG 2208
Query 4228 CT---GATCACGTCGTGCGCCTTGAGCACCAGGGCGGTTTTCACGTCCACGGAATAGGTG 4284
| ||||||||| || ||||||||||||||||| | ||| | |||| | || |||
Sbjct 2207 CCCTGGATCACGTCCTGGGCCTTGAGCACCAGGGCATTCTTCGCCTCCAGGCTGTA-GTG 2149
Query 4285 AAGCCTTCGGCAT---CCGGACG--GAACTTCTGCACCAGGCGGAACACCGCATCGCCGA 4339
|| |||| | |||| | ||| | | ||||||| ||||||| | | ||||
Sbjct 2148 AA----TCGGAGTAGCCCGGGGGAAGAAGTCTTTCACCAGGTCGAACACCCCGTAACCGA 2093
Query 4340 TGCCGGTCCGGTCGATGCCCACGTAGGCGACGTCGTAGCGCTC 4382
|||||| ||||||||| | || ||||| | |||||||
Sbjct 2092 CGCCGGTAATGTCGATGCCGATGTGCTGGACGTTGAAGCGCTC 2050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123901138781816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |