Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq2742 141 2e-29 >seq2742 Length=6849 Score = 141 bits (156), Expect = 2e-29 Identities = 433/660 (66%), Gaps = 31/660 (5%) Strand=Plus/Minus Query 4656 GTCGATGAATACGCACATGAGCAGGTTGGCGAAATCGAGTTCGCTGTACTCCAGGCGCAG 4715 ||||||||| |||||||| ||| | |||| |||| ||||||||| |||| Sbjct 1782 GTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAG 1723 Query 4716 CTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGCATCCTCCACCGTCACGATTTG 4775 | || |||||||||||||||||||||||| || || || | | ||| | || | Sbjct 1722 GCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTT 1663 Query 4776 GCGCCACTGGCCGTCCGCGCAGCGCATGCCGTCGCGAAGCGCGGCGTGGCTCAGGTCGA- 4834 ||||||||| ||||||| ||| | |||| | | | | || | ||| || | | Sbjct 1662 GCGCCACTGCCCGTCCGGGCACAACGCGCCGGCATGGATCTGCGCTTCGCT--GGGCCAC 1605 Query 4835 -GCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCCGGACCAGAACGGA 4893 || | || | | ||| | ||||| | | |||| |||||| |||| ||||| Sbjct 1604 GGCCCGGCCT-TCTTTCC--GCGCTTGCTGTTGCGGAACTCCTCGCCGGTCCAGTACGGA 1548 Query 4894 TAGGCCTCATGCG---ACAAGCTGGACGGCGTGGAGAAGTAGGTCTGACGCCAGTGCTTG 4950 || |||| |||| | |||| |||||||||||||||||| | ||||| | ||| Sbjct 1547 TATGCCTGGTGCGTTACCGCGCTG---GGCGTGGAGAAGTAGGTCAGGCGCCACT--TTG 1493 Query 4951 --TGGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCGCGGCACCCAGAAGT 5008 || ||||| || ||| ||| | |||| | |||||| || | |||||| Sbjct 1492 CATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACA 1433 Query 5009 ATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGGGCGTTCGTGCCGAGAA 5068 ||| |||| ||| | || |||||| || |||||| ||| | |||||| ||||| Sbjct 1432 CTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAA 1373 Query 5069 -----AGT-------AGAGCGTGGCGCCGTTGGGCAGCACCATCGGATCGCCCTTCAGCT 5116 ||| | || || || | ||| || | || |||| ||| ||||| Sbjct 1372 ACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTCAAGATGATGGGATTGCCGGACAGCT 1313 Query 5117 CGATCCCGGCCGCGTCCTTGGCGAACTGGATGATGTA-TTGCTTGAAGACGTGCGCCTGC 5175 |||| || | | | ||||||| || |||||| ||| ||| || | | ||| Sbjct 1312 CGATATCGAACCATTGCGCGGCGAACGCGACGATGTAGCTGC-GGAACACTTCGGACTGG 1254 Query 5176 GCCTTGCTGGCCGATAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCGATGAACGCC 5235 || ||| || || ||||||||||||||| ||||| || ||||| |||||||| Sbjct 1253 GCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCT 1194 Query 5236 TCGCGTGCGAAGTACCACGTCGCGCCGATCTGCCGGCTCTTGAGCAGGTTGCGGATGCGC 5295 ||| |||||||| | ||| |||||||| || ||| || | | |||||| ||| Sbjct 1193 TCGGCGGCGAAGTAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATATGGCGGATCCGC 1134 Score = 84.2 bits (92), Expect = 5e-12 Identities = 155/223 (70%), Gaps = 16/223 (7%) Strand=Plus/Minus Query 4168 ATGGACATGAACGACGCGGCGAAGTCCGTCCAGCCGGCGTCGAACTCCAGCCTGCCCTTG 4227 || |||| ||||| ||| |||| || ||||| ||||| || | || | ||| |||| Sbjct 2264 ATCGACAGGAACGCCGCCGCGACCTCGGTCCAACCGGCATCCCATTCGA---TGCGCTTG 2208 Query 4228 CT---GATCACGTCGTGCGCCTTGAGCACCAGGGCGGTTTTCACGTCCACGGAATAGGTG 4284 | ||||||||| || ||||||||||||||||| | ||| | |||| | || ||| Sbjct 2207 CCCTGGATCACGTCCTGGGCCTTGAGCACCAGGGCATTCTTCGCCTCCAGGCTGTA-GTG 2149 Query 4285 AAGCCTTCGGCAT---CCGGACG--GAACTTCTGCACCAGGCGGAACACCGCATCGCCGA 4339 || |||| | |||| | ||| | | ||||||| ||||||| | | |||| Sbjct 2148 AA----TCGGAGTAGCCCGGGGGAAGAAGTCTTTCACCAGGTCGAACACCCCGTAACCGA 2093 Query 4340 TGCCGGTCCGGTCGATGCCCACGTAGGCGACGTCGTAGCGCTC 4382 |||||| ||||||||| | || ||||| | ||||||| Sbjct 2092 CGCCGGTAATGTCGATGCCGATGTGCTGGACGTTGAAGCGCTC 2050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123901138781816