Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17]
6,294 sequences; 619,300,777 total letters
Query= NC_009542.2
Length=33985
Score E
Sequences producing significant alignments: (Bits) Value
seq2742 224 2e-54
>seq2742
Length=6849
Score = 224 bits (248), Expect = 2e-54
Identities = 649/983 (66%), Gaps = 57/983 (6%)
Strand=Plus/Minus
Query 13419 CTCTATCTCCTGCGCCTGATACTGGAAGTTCAACCCGCGCCAGTAGTGCTTTTCCAGCAC 13478
||| |||| || ||||||| | ||| | ||| |||||| |||||| ||||| |
Sbjct 2040 CTCGATCTGCTTTGCCTGATGCGTGAACGACGTCCCCCGCCAGCTGTGCTTCTCCAGGAT 1981
Query 13479 TCGGAAGCGCTCGCCGGCAACCGTGGGCGGGGCGACCACCACCAGGGTGGCATTGTCGCG 13538
|||||| |||| | || ||||||||| || || || || || | ||||||
Sbjct 1980 TCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCACGTCGCGTCGTCGCG 1921
Query 13539 GGTGCGGCTCGGGTCATAACCCATCCACACCTCGCGCCGCCCGAACGGGTCAGGAC-GCC 13597
||| || || |||||||| || | ||| ||| ||| ||||||| || | | |
Sbjct 1920 GGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTC 1861
Query 13598 CGGGCTTGTAGTCCTCCCATCGGGTGGGGTCC--ACCCCTGCCCGCTCCATGTCCTGGAA 13655
|||| | |||||| |||| || ||| | | || |||||| ||| ||
Sbjct 1860 CGGG-TCGTAGTCAGTCCATAGGCCCAAGTCGGAATAGCAGC--GCTCCAGGTCGGTCAA 1804
Query 13656 CTTGAACACAGACAGGGCATCGTCGATAAAGCGGCACATGTAGAGGCGGTCGAACACCTC 13715
||| ||| | ||| |||||| || ||||||| | || | ||||| |||
Sbjct 1803 GGCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTC 1744
Query 13716 CTCCGGGTACTCGTCCTTGAGCTCCTCGATGTCGATGAGGTGGCAACCGA-GGCGAATGG 13774
|| |||||| || || ||| | ||||| |||| ||| ||| ||||| |||
Sbjct 1743 TTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGA-TGG 1685
Query 13775 CGTCCTCGATGGTGATGACGTAGCGCCACTGCCTGTCAGGGCAGATGCGGCCGCCGTCGC 13834
|||| | || |||||||| | ||||||||||| ||| ||||| | || ||||| ||
Sbjct 1684 CGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAA-CG--CGCCG--GC 1630
Query 13835 GTAGGTCATCTTCACCAGGGAAGTCGATGGCCACCCGGCTCGGCCG-CTGTCC---CTTC 13890
| | |||| | | ||| ||| | | |||| ||||| || ||| |||
Sbjct 1629 ATGG---ATCTGCGCT-------TCGCTGGGC-CACGGCCCGGCCTTCTTTCCGCGCTTG 1581
Query 13891 CAGC----GA-----TCCCCGGTCCAGAACCGGTACGCCTCGTGC---ACCTTGCTCGAC 13938
| | || || ||||||||| || | || |||| |||| ||| ||| | |
Sbjct 1580 CTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTGGGC 1521
Query 13939 GGGGTCGAGAAGTAGGTCTTGCGCCAGTGGCTCTGGGTCGCCATGGCACTGGCCACA-TC 13997
| || ||||||||||| |||||| | || | ||||| || |||||||| ||
Sbjct 1520 GTGG---AGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTC 1464
Query 13998 AGACAGCTTCTCGAAGTTGGGGATCCAGAAGTATTCGTCGATGTAGACGTTGCCGGAGCG 14057
| |||||||| ||| |||||||||||||| ||||||||||||||||| |||| |
Sbjct 1463 TG-CAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTA 1405
Query 14058 GGACTGGGCACTGTTGGAGTTGGTGGAGCAGAAGTGCAGCTCGGCCC------------C 14105
| ||| || ||||| ||| || ||| || |||| || |||| |
Sbjct 1404 GCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTC 1345
Query 14106 GTTCGACAGCACGATGGGGTTGCCGGTCAGGGTGACGCCGAGGAAGGTCTGGGCGATCTT 14165
|| || | |||||| ||||||| ||| || ||| | | ||||| |
Sbjct 1344 TTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAACGC 1285
Query 14166 GCAGATATAGGAGCGGAACACCTCCGCCTGGGCGCGGGTGGCGGACAGGAAAATCTGGTT 14225
| ||| ||| ||||||||| || | |||||||||| | ||||||||||||||||||||
Sbjct 1284 GACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTT 1225
Query 14226 GCCACCCGTCAGAATGGCATCCTCCAACGCCTCGCCGGCGAAATAGTAAGTCATCCCGAT 14285
| | || ||||| | || ||| ||||| ||| ||||||| ||||| |||| ||||||
Sbjct 1224 GTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGAT 1165
Query 14286 CTGACGGGACTTGAGAATGTTACGGGTGCGCGGCAGCGCCGGGTCGTTCTTGGCCTCCCG 14345
||| || ||||| || || | ||| | |||| | ||| | ||||| ||| |
Sbjct 1164 CTGGCGCGACTTCAGGATATGGCGGATCCGCGCCGTAAGCGGATTCTTCTTCGCCGCGAA 1105
Query 14346 CACACGCAACTGATAGCCGAACA 14368
|| || ||| ||||||||||
Sbjct 1104 CAGTTCCAGCTGGTAGCCGAACA 1082
Score = 84.2 bits (92), Expect = 5e-12
Identities = 159/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 11544 GGGATGTTCACGAACATCGAGCGGAAGTTCCCTACCCCTTTGGAGTT--CGCGATCATCT 11601
|||||||| |||||||| ||||||||||| || || || || | || ||| ||| ||
Sbjct 3150 GGGATGTTGACGAACATAGAGCGGAAGTTACCGACTCCCTT--ACTTGCCGCAATCTGCT 3093
Query 11602 CCTTCATCTCCTCTTCGGTGTCGTCGTCCATGTTGGGGTCGGTCGCGTAGAAGATGAACC 11661
|||| | |||||| || || || || |||| ||| ||||| | | |
Sbjct 3092 GTTTCAGATTCTCTTCATCTTCTTCCGACAAATTCTCGTCGTTCGTATAGAACACATATC 3033
Query 11662 CCATGTGGGCGCCGTTGAGGAAGTAGCGGCGTCGGAACAGGGTGGCGTCCTGGTTGAGCA 11721
| ||||||||||| | ||||||| || || ||||| || || | | ||| | ||
Sbjct 3032 CGGCATGGGCGCCGTTACTGTAGTAGCGCCGGCGAAACAGTGTCGCCGCTTCGTTCAACA 2973
Query 11722 GCGCAGACTGCAGGCCGCCAAGGTAATCGGGCATGCCATAGACCTGCTGCTC 11773
|| ||||| || ||||| | ||| ||||| || || |||| | ||||||
Sbjct 2972 GCAGCGACTGGAGCCCGCCCAAGTAGTCGGGTATCCCGTAGATGTTCTGCTC 2921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 108622280828116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |