Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq2742 224 2e-54 >seq2742 Length=6849 Score = 224 bits (248), Expect = 2e-54 Identities = 649/983 (66%), Gaps = 57/983 (6%) Strand=Plus/Minus Query 13419 CTCTATCTCCTGCGCCTGATACTGGAAGTTCAACCCGCGCCAGTAGTGCTTTTCCAGCAC 13478 ||| |||| || ||||||| | ||| | ||| |||||| |||||| ||||| | Sbjct 2040 CTCGATCTGCTTTGCCTGATGCGTGAACGACGTCCCCCGCCAGCTGTGCTTCTCCAGGAT 1981 Query 13479 TCGGAAGCGCTCGCCGGCAACCGTGGGCGGGGCGACCACCACCAGGGTGGCATTGTCGCG 13538 |||||| |||| | || ||||||||| || || || || || | |||||| Sbjct 1980 TCGGAACTTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCACGTCGCGTCGTCGCG 1921 Query 13539 GGTGCGGCTCGGGTCATAACCCATCCACACCTCGCGCCGCCCGAACGGGTCAGGAC-GCC 13597 ||| || || |||||||| || | ||| ||| ||| ||||||| || | | | Sbjct 1920 GGTTCGACTGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTC 1861 Query 13598 CGGGCTTGTAGTCCTCCCATCGGGTGGGGTCC--ACCCCTGCCCGCTCCATGTCCTGGAA 13655 |||| | |||||| |||| || ||| | | || |||||| ||| || Sbjct 1860 CGGG-TCGTAGTCAGTCCATAGGCCCAAGTCGGAATAGCAGC--GCTCCAGGTCGGTCAA 1804 Query 13656 CTTGAACACAGACAGGGCATCGTCGATAAAGCGGCACATGTAGAGGCGGTCGAACACCTC 13715 ||| ||| | ||| |||||| || ||||||| | || | ||||| ||| Sbjct 1803 GGCGAATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTC 1744 Query 13716 CTCCGGGTACTCGTCCTTGAGCTCCTCGATGTCGATGAGGTGGCAACCGA-GGCGAATGG 13774 || |||||| || || ||| | ||||| |||| ||| ||| ||||| ||| Sbjct 1743 TTCGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGA-TGG 1685 Query 13775 CGTCCTCGATGGTGATGACGTAGCGCCACTGCCTGTCAGGGCAGATGCGGCCGCCGTCGC 13834 |||| | || |||||||| | ||||||||||| ||| ||||| | || ||||| || Sbjct 1684 CGTCTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAA-CG--CGCCG--GC 1630 Query 13835 GTAGGTCATCTTCACCAGGGAAGTCGATGGCCACCCGGCTCGGCCG-CTGTCC---CTTC 13890 | | |||| | | ||| ||| | | |||| ||||| || ||| ||| Sbjct 1629 ATGG---ATCTGCGCT-------TCGCTGGGC-CACGGCCCGGCCTTCTTTCCGCGCTTG 1581 Query 13891 CAGC----GA-----TCCCCGGTCCAGAACCGGTACGCCTCGTGC---ACCTTGCTCGAC 13938 | | || || ||||||||| || | || |||| |||| ||| ||| | | Sbjct 1580 CTGTTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTGGGC 1521 Query 13939 GGGGTCGAGAAGTAGGTCTTGCGCCAGTGGCTCTGGGTCGCCATGGCACTGGCCACA-TC 13997 | || ||||||||||| |||||| | || | ||||| || |||||||| || Sbjct 1520 GTGG---AGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCATCGCGCTGGCCACCGTC 1464 Query 13998 AGACAGCTTCTCGAAGTTGGGGATCCAGAAGTATTCGTCGATGTAGACGTTGCCGGAGCG 14057 | |||||||| ||| |||||||||||||| ||||||||||||||||| |||| | Sbjct 1463 TG-CAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTA 1405 Query 14058 GGACTGGGCACTGTTGGAGTTGGTGGAGCAGAAGTGCAGCTCGGCCC------------C 14105 | ||| || ||||| ||| || ||| || |||| || |||| | Sbjct 1404 GCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTC 1345 Query 14106 GTTCGACAGCACGATGGGGTTGCCGGTCAGGGTGACGCCGAGGAAGGTCTGGGCGATCTT 14165 || || | |||||| ||||||| ||| || ||| | | ||||| | Sbjct 1344 TTTGCTCAAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAACGC 1285 Query 14166 GCAGATATAGGAGCGGAACACCTCCGCCTGGGCGCGGGTGGCGGACAGGAAAATCTGGTT 14225 | ||| ||| ||||||||| || | |||||||||| | |||||||||||||||||||| Sbjct 1284 GACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTT 1225 Query 14226 GCCACCCGTCAGAATGGCATCCTCCAACGCCTCGCCGGCGAAATAGTAAGTCATCCCGAT 14285 | | || ||||| | || ||| ||||| ||| ||||||| ||||| |||| |||||| Sbjct 1224 GTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGAT 1165 Query 14286 CTGACGGGACTTGAGAATGTTACGGGTGCGCGGCAGCGCCGGGTCGTTCTTGGCCTCCCG 14345 ||| || ||||| || || | ||| | |||| | ||| | ||||| ||| | Sbjct 1164 CTGGCGCGACTTCAGGATATGGCGGATCCGCGCCGTAAGCGGATTCTTCTTCGCCGCGAA 1105 Query 14346 CACACGCAACTGATAGCCGAACA 14368 || || ||| |||||||||| Sbjct 1104 CAGTTCCAGCTGGTAGCCGAACA 1082 Score = 84.2 bits (92), Expect = 5e-12 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 11544 GGGATGTTCACGAACATCGAGCGGAAGTTCCCTACCCCTTTGGAGTT--CGCGATCATCT 11601 |||||||| |||||||| ||||||||||| || || || || | || ||| ||| || Sbjct 3150 GGGATGTTGACGAACATAGAGCGGAAGTTACCGACTCCCTT--ACTTGCCGCAATCTGCT 3093 Query 11602 CCTTCATCTCCTCTTCGGTGTCGTCGTCCATGTTGGGGTCGGTCGCGTAGAAGATGAACC 11661 |||| | |||||| || || || || |||| ||| ||||| | | | Sbjct 3092 GTTTCAGATTCTCTTCATCTTCTTCCGACAAATTCTCGTCGTTCGTATAGAACACATATC 3033 Query 11662 CCATGTGGGCGCCGTTGAGGAAGTAGCGGCGTCGGAACAGGGTGGCGTCCTGGTTGAGCA 11721 | ||||||||||| | ||||||| || || ||||| || || | | ||| | || Sbjct 3032 CGGCATGGGCGCCGTTACTGTAGTAGCGCCGGCGAAACAGTGTCGCCGCTTCGTTCAACA 2973 Query 11722 GCGCAGACTGCAGGCCGCCAAGGTAATCGGGCATGCCATAGACCTGCTGCTC 11773 || ||||| || ||||| | ||| ||||| || || |||| | |||||| Sbjct 2972 GCAGCGACTGGAGCCCGCCCAAGTAGTCGGGTATCCCGTAGATGTTCTGCTC 2921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108622280828116