Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq331 125 2e-23 >seq331 Length=323222 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||||| ||| ||||| || ||||| | || || || || ||| Sbjct 7510 TCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 7569 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || || ||| || ||||| ||||||||||| || || || ||| Sbjct 7570 ATCAGCCTCTGCTGG---TCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACG 7626 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | || || || || ||||| ||||| ||||| || |||||| Sbjct 7627 TTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 7686 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 7687 ACAAAGATCTGCAT 7700 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| || ||||| | || || || || ||| Sbjct 7738 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 7797 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || || ||| || ||||| ||||||||||| || || || ||| Sbjct 7798 ATCAGCCTCTGCTGG---TCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACG 7854 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | || || || || ||||| ||||| ||||| || ||||| Sbjct 7855 TTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTC 7914 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 7915 ACAAAGATCTGCAT 7928 Score = 113 bits (124), Expect = 1e-19 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||||| ||| ||||| || ||||| | ||| || || || ||| Sbjct 11313 TCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGTTGCTTGCCGGCAAAG 11372 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | || || ||||| ||||||||||| || || || || || Sbjct 11373 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 11432 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 || |||| || || | || || || || ||||| ||||| |||||||| |||| Sbjct 11433 TCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCT 11487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179559270457332