Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq331 105 7e-18 seq1541 89.7 6e-13 seq822 89.7 6e-13 seq4 87.8 2e-12 seq8 82.4 8e-11 >seq331 Length=323222 Score = 105 bits (116), Expect = 7e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032 |||||| |||| || || | ||||| || | || | ||| |||||| || || || Sbjct 7465 ATTTATTGACCGCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTA 7524 Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 || || | || || || | || || |||||||| ||||| || || || | ||||||| Sbjct 7525 TAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG 7584 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTC 42152 |||| || | || ||||| ||| ||| || |||| || | | |||||||| Sbjct 7585 TCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTG 7644 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || | |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 7645 GGCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 7700 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||| || | || | ||| |||||| || || ||||| || | Sbjct 7701 ACCGCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 7760 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || || || | ||||||||||| || Sbjct 7761 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGG 7820 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| ||| ||| || |||| || | | ||||| || | || || Sbjct 7821 AATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 7880 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||| ||||| || || ||||| |||||||| ||||| || Sbjct 7881 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATGTT 7931 >seq1541 Length=45169 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 26449 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 26508 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 26509 TACTAACGAGGA 26520 >seq822 Length=122784 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 68735 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 68676 Query 57067 TACTACCGAGGATTGAATA 57085 ||||| |||||| ||| || Sbjct 68675 TACTAACGAGGAGTGAGTA 68657 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 67752 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 67693 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 67692 TACTAACGAGGAGTG 67678 >seq4 Length=8983680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 4200099 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4200158 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4200159 ATACTAACGAGGA 4200171 >seq8 Length=7070605 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 4670 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 4611 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 4610 TACTAACGAGGAT 4598 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 5057 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 4998 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 4997 TACTAACGAGGAT 4985 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 5444 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 5385 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 5384 TACTAACGAGGAT 5372 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 5831 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 5772 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 5771 TACTAACGAGGAT 5759 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 6218 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 6159 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 6158 TACTAACGAGGAT 6146 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 6605 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 6546 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 6545 TACTAACGAGGAT 6533 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 6992 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 6933 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 6932 TACTAACGAGGAT 6920 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7379 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 7320 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 7319 TACTAACGAGGAT 7307 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7766 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 7707 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 7706 TACTAACGAGGAT 7694 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 8153 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 8094 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 8093 TACTAACGAGGAT 8081 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 8540 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 8481 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 8480 TACTAACGAGGAT 8468 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 8927 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 8868 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 8867 TACTAACGAGGAT 8855 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 9314 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 9255 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 9254 TACTAACGAGGAT 9242 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 9701 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 9642 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 9641 TACTAACGAGGAT 9629 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 10088 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 10029 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 10028 TACTAACGAGGAT 10016 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 10475 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 10416 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 10415 TACTAACGAGGAT 10403 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 10862 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 10803 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 10802 TACTAACGAGGAT 10790 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 11249 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 11190 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 11189 TACTAACGAGGAT 11177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543170062732960