Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq67 210 2e-49 seq30 98.7 1e-15 >seq67 Length=1635559 Score = 210 bits (232), Expect = 2e-49 Identities = 959/1502 (64%), Gaps = 39/1502 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| |||||| ||||||||| ||| ||||| || ||||| | |||| Sbjct 31884 TACAACTTCTTTGGCTTCAAGACTCTGGAGCGGTCCTACCTGCTGAAGATCAACGGCAAA 31943 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || |||| ||||| || || |||| ||| | || | | || || ||| | ||| Sbjct 31944 GTGGCCGAACGACCCCAGCACATGCTCATGAGGGTTTCTGTTGGCATCCACAGAACGGAC 32003 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | || | ||| | || || || ||| | || ||| ||| ||| || Sbjct 32004 ATCGACGCAGCCATTGAGACCTA-CA---ACCTGCTGTCGGAGAAGTGGTTCACCCACGC 32059 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | | || || || ||||| || || ||| ||| ||| |||| || |||||| | Sbjct 32060 CTCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCT 32119 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | | |||| |||| |||| || || | ||||| || ||| | ||||| ||| Sbjct 32120 CGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACTCTGAAGCAGTGTGCCCTCAT 32179 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 |||||| | || || |||||||| | |||| | | | | | | || ||| Sbjct 32180 CTCAAAGTCGGCTGGAGGAATCGGTGTGGCTGTCAGCTGCATCAGATCAACAGGGAGCTA 32239 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| ||| || || |||| ||| ||||| | ||||| ||||| | || | |||||| Sbjct 32240 CATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCCCCATGCTGAGAGTTTACAACAA 32299 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | ||||||| || || |||||||| || | || || | ||||| | || || Sbjct 32300 CACGGCGCGTTATGTCGACCAGGGCGGCAACAAAAGACCCGGAGCCTTCGCCATGTACCT 32359 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||| || ||| | ||| | || ||| |||||| || || || Sbjct 32360 GGAGCCGTGGCACTTCGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGA 32419 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | |||||||||||||||| |||||||| || ||| | || ||| | || ||||| | Sbjct 32420 GGAGCAGAGGGCCAGAGACCTTTTCTACGCCCTGTGGATCCCTGACTTGTTCATGAAGAG 32479 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || || | ||| | |||| ||| | ||||||||||| |||||||| ||| ||| Sbjct 32480 AGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCCAATGAGTGTCCCGGGCTGGACGA 32539 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 ||| || | ||||| | | || || || || | |||| | || || Sbjct 32540 GTGTTGGGGTGAGGAGTTTGAGAAGCTCTACACTTCATATGAGAAGGAGGGGAGGGTCAA 32599 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | || || | ||| | || ||||| | ||| | || ||| || || || Sbjct 32600 GCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATCATTGAGTCCCAGACAGAAACCGG 32659 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 |||||| ||||| ||| ||| ||| | |||| ||| |||||||||| | || || Sbjct 32660 TACGCCGTACATGCTGTACAAAGACGCCTGCAACCGAAAGAGCAACCAGCAGAATCTGGG 32719 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG--GACGAG 94611 ||||| ||| || || ||||| || || || || |||| | || || ||| Sbjct 32720 CACAATCAAAAGCAGCAACCTCTGCACAGAAATCGTTGA--ATACACCAGCGACGATGAG 32777 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 | || || ||||| |||| |||||| | || || | || || | ||| || Sbjct 32778 GTAGCGGTCTGTAATCTGGCCTCCAT--TGCGCTCAACAT--GTACGTCACCCCTGAGCG 32833 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-GATGGTCTTGAA 94730 ||| || || | | | || | | || | ||| || ||| || Sbjct 32834 --GACT------TTTGACTTTAAAAAACTAG-CATCTGTGACCAAAGTCATTGTCAGAAA 32884 Query 94731 CCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCT 94790 | |||||| | | ||||| | |||||||| || || || || |||||||| || ||| Sbjct 32885 CTTGAACAAGATCATCGAGATTAACTTCTATCCAGTGCCCGAAGCGGAGAAGTCCAAC-- 32942 Query 94791 GAAGCATC---GGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 |||| || |||| || || |||||||| || ||||| ||||| || | | |||| Sbjct 32943 -AAGCGTCACAGGCCAATAGGAATCGGCGTTCAAGGTTTGGCGGATGCCTTCATCCTGAT 33001 Query 94848 GCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907 |||| || | || ||| ||| | |||| | | || || || | ||| Sbjct 33002 GCGTTACCCGTTTGAAAGCCCCGAGGCGCAGCTGCTGAACATCCAAATCTTTGAGACCAT 33061 Query 94908 TTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966 || |||| ||| | || | | | | | | ||||| | || ||| || ||| Sbjct 33062 CTACTACGCCGCCCTGGAGGCGAGCTG-CGAGCTGGCC---GCTGAGCTCGGCCCCTACG 33117 Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | ||| | || || || | |||| || | |||| |||| | |||| || Sbjct 33118 AGACGTACGAAGGCTCTCCGGTCAGCAAGGGGATCCTCCAGTACGACATGTGGGAGAAGA 33177 Query 95027 AGCCCTCGGGTCTGTACGACTGGGAAGCT-CTACGCGCTGATGTTATCAAACACGGTGTG 95085 |||| | | ||||| |||| ||||||| || | | | ||||||||| ||| Sbjct 33178 CGCCCACCGATCTGTTGGACT-GGAAGCTGCTGAAGGAAAAGATCGCCAAACACGGCGTG 33236 Query 95086 AAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAAC 95145 | ||| || || ||||||| ||||||||||||||||| || |||||||| |||||| Sbjct 33237 AGGAACAGCCTACTGCTGGCCCCGATGCCCACGGCCTCCACAGCACAGATCCTGGGCAAC 33296 Query 95146 AACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAA 95205 |||||||| ||||| ||| |||| |||| | |||| | | |||| ||| | || || Sbjct 33297 AACGAGTCTATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCTGGAGAG 33356 Query 95206 TT 95207 || Sbjct 33357 TT 33358 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 ||||||||||| || ||||| || | | | || || ||| | || ||| |||||||| Sbjct 31494 GTCATGTTCGATAAAATCACCTCCCGCATCCAGAAGCTGTGCTACGGGCTGAACTCTGAC 31553 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 || |||||||| | | || | || |||| |||| |||||| | || ||| ||||| Sbjct 31554 TTTGTGGATCCAGCCCAGATTACGATGAAGGTGATTCAGGGTTTGTACAGCGGCGTCACC 31613 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510 || || |||||||| ||||| || |||| ||| | | || || ||||| Sbjct 31614 ACCGTGGAGCTCGACACGCTGGCGGCTGAGATCGCCGCCACTCTCACAACCAAACACCCC 31673 Query 93511 GACTACTCCATTTTGGCTGCTCGAATC 93537 ||||| | || | |||||||| ||| Sbjct 31674 GACTATGCAATCCTCGCTGCTCGGATC 31700 >seq30 Length=3550406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| || ||||| || |||||| Sbjct 774165 CATGGTGTGAGGAACAGCCTGCTCTTGGCCCCCATGCCCACAGCTTCCACTGCCCAGATC 774224 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| | || ||| |||| |||| | |||| | | |||||||| Sbjct 774225 CTGGGCAACAACGAGTCCATTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTC 774284 Query 95197 GCCGGGGAATTCCCCGTCA 95215 | || || || | |||| Sbjct 774285 TCAGGAGAGTTTCAGGTCA 774303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494684277652240