Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq67 179 4e-40 seq30 86.0 6e-12 >seq67 Length=1635559 Score = 179 bits (198), Expect = 4e-40 Identities = 906/1428 (63%), Gaps = 58/1428 (4%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | ||| | || ||||| ||||| || || || || |||| || || Sbjct 33325 TTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAGGCCGTG 33266 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| |||| || | |||| || |||||| || | ||||||| | Sbjct 33265 GGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTTTCCTTCAGC 33206 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACA-CTCC 153253 || ||| ||| |||| | | || ||| | ||||||||||||||| | | | || Sbjct 33205 AGCTTCCAGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATCCCC 33146 Query 153254 TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGC 153312 | | ||| | ||| ||| | |||| |||| |||| || | |||||| |||| Sbjct 33145 TTG-CTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGCTCGC 33088 Query 153313 AGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCG 153372 |||| ||||| || ||| | ||||| ||||| || |||||| | || || | || Sbjct 33087 AGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGATGTTCAGCAGCTGCG 33028 Query 153373 CTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATAC 153432 | || ||| || |||| |||| ||| | ||||| || |||| ||| || | | Sbjct 33027 CCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGC 32968 Query 153433 CGACGCCGATGGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATA 153487 ||| || || || | || || |||| || ||| ||| || | ||||| Sbjct 32967 CGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTCGGGCACT-----GGATA 32913 Query 153488 GTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAG 153547 | || ||||| || ||||| | ||| | || | ||||| || | | || Sbjct 32912 GAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGACTTTGGTCACAGATGCTAG 32853 Query 153548 TTTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACG 153606 ||| | || ||| | ||| || | | ||||| || || | ||||| || | Sbjct 32852 TTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTAC--ATG--TTGAGCGCAATGGAGG 32797 Query 153607 CCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGT 153666 ||||||||||||| || ||| ||| || | |||| | ||||| || | |||||||| Sbjct 32796 CCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGT 32737 Query 153667 TGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGA 153726 |||||| ||| || ||||| ||| ||||| ||||| || || ||||| ||||||||| Sbjct 32736 TGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGT 32677 Query 153727 AGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATG 153778 | ||||||||||| ||||| || || | || | ||| | ||| || Sbjct 32676 ACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCGTGCCACACC--TG 32619 Query 153779 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAG 153838 | | ||| | | ||| |||| || | ||||| |||| ||| ||| || Sbjct 32618 CTGAGCCTTCAC---CACACGCT--TGA-CCCTCCCCTCCTTCTCATATGAAGTGTAGAG 32565 Query 153839 TCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAG 153898 ||||||||| || || | || ||| | || |||||||||| || ||||||||||| Sbjct 32564 CTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAG 32505 Query 153899 CGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958 ||||| | || | | || | |||||||| || || | ||| || ||||| Sbjct 32504 AGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGGGCGTA 32445 Query 153959 CATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCT 154018 | ||||| | ||| | |||||| || |||| ||||| | || | | Sbjct 32444 GAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTC 32385 Query 154019 ATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCC 154075 | | | ||| |||||| || || | ||| | ||| | ||| || | | || || Sbjct 32384 AAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCC 32325 Query 154076 GCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCT 154135 |||||| ||||| | ||| || | |||||| | || | || |||||| | | ||| | Sbjct 32324 GCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTT 32265 Query 154136 TGCGGTGCCGTTGGT--CG--AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGT 154191 || | ||||||| || || ||| | || ||| | | ||||||| | Sbjct 32264 TGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTG---------ATCTGATGCAGCT 32214 Query 154192 TA-----ACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCC 154245 | || || || || || |||| ||||||| ||| || || | ||| || Sbjct 32213 GACAGCCACACCGATTCCTCCAGCCG-ACTTTGAGATGAGGGCACACTGCTTCAGAGTGT 32155 Query 154246 TGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCG 154305 ||||||||| |||||||| ||||| | | |||||| ||| || ||| || | Sbjct 32154 CGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAG 32095 Query 154306 GAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365 | || || || || ||||| || || ||||| || ||| || | || Sbjct 32094 GCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACA 32035 Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425 || | ||| || || ||||| | ||||| || | ||| ||||| | | || | Sbjct 32034 GCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCC 31975 Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCA 154473 ||||||||||||||| || |||||||| ||| | || ||||||| Sbjct 31974 TCATGAGCATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCA 31927 >seq30 Length=3550406 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| |||||||| | ||| ||||||||| |||| ||| ||||| || ||||| | Sbjct 773352 TGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 773293 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| || | |||||| || || ||| | ||||||||||| Sbjct 773292 TGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGG 773253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496223356555680