Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq67 104 2e-17 seq331 82.4 7e-11 >seq67 Length=1635559 Score = 104 bits (114), Expect = 2e-17 Identities = 490/760 (64%), Gaps = 34/760 (4%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| | || || | ||||||||| || | ||| || | | Sbjct 33391 AGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTG 33332 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | | |||| ||||||||||| || || ||||| || || | Sbjct 33331 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAG 33272 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223 || || ||||| |||| ||| | ||| |||||||||||| | ||||||||| Sbjct 33271 GCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTTTCC 33212 Query 146224 C---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAA 146280 | || || ||| | | ||| |||| ||||| | | | ||||||| Sbjct 33211 TTCAGCAGCTT---CCAGTCCAACA---GATCGGTGGGCGTCTTCTCCCACATGTCGTAC 33158 Query 146281 TGCATAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATC 146337 || | | || || || | | | || | |||||| || || || ||| | || Sbjct 33157 TGGAGGATCCCCTTGCTGACCGGAGAGCCTT---CGTACGTCTCGTAGGGGCCGA-GCTC 33102 Query 146338 TT-GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA 146396 |||||| |||||||| || ||||| || | |||| |||||||| ||| | Sbjct 33101 AGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGAT 33042 Query 146397 GTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCG 146454 ||| | || ||| ||||| ||| || | ||| || || | || | ||||| || Sbjct 33041 GTTCA-GCAGCTGCGCCTCGGGGCTTTCAAACGGG-TAACGCATCAGGATGAAGGCATCC 32984 Query 146455 GCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCC 146514 || | ||| || | |||| || | || | ||| |||||| ||| | || | Sbjct 32983 GCCAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTCG 32924 Query 146515 G-CAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGT 146573 | || ||| |||| ||| | |||||||||||||| | || | || | | ||| || Sbjct 32923 GGCACTGG-ATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGACTTTGGT 32865 Query 146574 CAAACGATTC-AGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGA 146632 || | ||| | || | ||||||| || | | | ||||| || |||||| Sbjct 32864 CACA-GATGCTAGTTTTTTAAAGTCAAAAGTCCGC---TCAGGGGTGACGTACATGTTGA 32809 Query 146633 CGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCT 146692 || || ||||||| ||||| || || ||| || | | | || | || || | Sbjct 32808 GCGCAATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTT 32749 Query 146693 CGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GT 146749 | | |||||||||||||| ||||| |||||| ||| | ||||| || ||| || Sbjct 32748 CTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCT---CTTTCGGT 32692 Query 146750 TGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 |||||| ||| ||||| ||||||||||| |||||||| Sbjct 32691 TGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTC 32652 >seq331 Length=323222 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || ||||| || || || |||||| | |||||| || || || ||| Sbjct 12944 GTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATG 13003 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCG 127069 || ||||||||| ||||| ||| | | || | |||||| | |||||| || Sbjct 13004 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTGTCGCTGGGCTCGACCTCA 13063 Query 127070 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | ||| | || ||||| || || || || ||||||||||||||| Sbjct 13064 AGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 13108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475463389974560