Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq67 179 3e-40 seq331 84.2 2e-11 >seq67 Length=1635559 Score = 179 bits (198), Expect = 3e-40 Identities = 872/1378 (63%), Gaps = 22/1378 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || |||||||| || || ||||||||| | || || | ||| | ||| || Sbjct 31941 AAAGTGGCCGAACGACCCCAGCACATGCTCATGAGGGTTTCTGTTGGCATCCACAGAACG 32000 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| || | || || ||| | || |||| | || | ||||| ||||| Sbjct 32001 GACATCGACGCAGCCATTGAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCC 32060 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || ||| | ||| ||||| || || ||||||| |||| || || ||||| Sbjct 32061 TCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTC 32120 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || ||||| || ||| || | || || | || Sbjct 32121 GCCATGAAGGACGACAGCATCGAAGGCATCTACGACACTCTGAAGCAGTGTGCCCTCATC 32180 Query 123138 TCCAAATTTGGC-GGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196 || ||| | ||| || || || || ||| || | | | ||| || ||| Sbjct 32181 TC-AAAGTCGGCTGGAGGAATCGGTGTGGCTGTCAGCTGCATCAGATCAACAGGGAGCTA 32239 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 ||| |||| |||| | | | |||| | | |||||||| |||||||||| || Sbjct 32240 CATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCCCCATGCTGAGAGTTTACAACAA 32299 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA------GGCGCGATGGCGATCTA 123310 | | | ||| | ||||||||||||||||| |||| || || | || || || Sbjct 32300 CACGGCGCGTTATGTCGACCAGGGCGGCAA---CAAAAGACCCGGAGCCTTCGCCATGTA 32356 Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGC 123370 || || ||||||||| | ||||||| || || | | | || |||| || Sbjct 32357 CCTGGAGCCGTGGCACTTCGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAA 32416 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 ||| || ||| ||| | || | || ||||| | ||| | || || ||||| ||| Sbjct 32417 GGAGGAGCAGAGGGCCAGAGACCTTTTCTACGCCCTGTGGATCCCTGACTTGTTCATGAA 32476 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAG 123490 | || || | || | ||||| || ||||||||| || ||||||||| || Sbjct 32477 GAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCCAATGAGTGTCCCGGGCTGGA 32536 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACA 123550 ||| || || | ||||||| || | ||| | ||| ||| || || | Sbjct 32537 CGAGTGTTGGGGTGAGGAGTTTGAGAAGCTCTACACTTCATATGAGAAGGAGGGGAG--- 32593 Query 123551 GGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607 ||| | || ||| ||| | | ||| | || || || | || || Sbjct 32594 GGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATCATTGAGTCCCAGACAGA 32653 Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667 |||||| |||||||||||||| |||||||||||||||||| | || | ||| ||| || Sbjct 32654 AACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACCGAAAGAGCAACCAGCAGAA 32713 Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGA 123727 |||| ||||| ||| | || || || ||| | ||||| | ||||||| | | ||| Sbjct 32714 TCTGGGCACAATCAAAAGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGACGA 32773 Query 123728 TCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCGTCGAAAACG-GC 123785 | | || || || |||||| |||| || | ||||| | || | |||| | || Sbjct 32774 TGAGGTAGCGGTCTGTAATCTGGCCTCCA-TTGCGCTCAACATGTACGTCACCCCTGAGC 32832 Query 123786 G--CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACA 123843 | ||||| | || ||| || | | || ||| | || | || ||||||| Sbjct 32833 GGACTTTTGACTTTAAAAAACTAGCATCTGTGACCAAAGTCATTGTCAGAAACTTGAACA 32892 Query 123844 AAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACA 123903 | || ||||| |||| || ||||| || |||||| ||| || | |||| Sbjct 32893 AGATCATCGAGATTAACTTCTATCCAGTGCCCGAAGCGGAGAAGTCCAACAAGCGTCACA 32952 Query 123904 GACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGT 123963 | || | ||| | ||| ||||||| ||||| || || || | || |||| |||| Sbjct 32953 GGCCAATAGGAATCGGCGTTCAAGGTTTGGCGGATGCCTTCATCCTGATGCGTTACCCGT 33012 Query 123964 ACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCG 124023 |||||| ||| || || |||| || | ||||| || || || || |||| || Sbjct 33013 TTGAAAGCCCCGAGGCGCAGCTGCTGAACATCCAAATCTTTGAGACCATCTACTACGCCG 33072 Query 124024 CTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCA 124083 | |||||||||||||||| || || | |||| | ||||| | |||| ||| Sbjct 33073 CCCTGGAGGCGAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCT 33132 Query 124084 GCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGT 124143 |||| ||| || || | ||||||||||||||| | || || || || ||| Sbjct 33133 CTCCGGTCAGCAAGGGGATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCGATCTGT 33192 Query 124144 GGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGG 124203 |||||||| | | || || || | | ||||| || | ||| || || Sbjct 33193 TGGACTGGAAGCTGCTGAAGGAAAAGATCGCCAAACACGGCGTGAGGAACAGCCTACTGC 33252 Query 124204 TGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGA 124261 |||| ||||| ||||| |||| || || || | || |||||||| || |||| Sbjct 33253 TGGCCCCGATGCCCACGGCCTCCACAGCACAGATCCTGGGCAACAACGAGTCTATCGA 33310 >seq331 Length=323222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| ||||| ||| || ||| ||| ||| Sbjct 7492 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCATCTTCC 7551 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | |||| | |||||||| || ||||||||||| ||||| || Sbjct 7552 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGG 7611 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||||||| | ||| || || || || | || || Sbjct 7612 ATCTTGGCCTTGA-CGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTT 7670 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || ||||| || ||||| Sbjct 7671 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 7700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451967638648240