Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq39 104 3e-17 >seq39 Length=2776481 Score = 104 bits (114), Expect = 3e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || |||| || || ||| || ||||| |||||||| ||||||||| || Sbjct 1662012 GCAGTGTTGACAATGTTGAAGCCGACGCTTCCTCCGAATGTGCTGGGCTTCCAGTACTCC 1661953 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| |||| | ||||| | |||| | || ||||||| ||| | Sbjct 1661952 GGGGAGCAGATGGGGTTTCCCATTAAGCCTTTGAGGGAATAAGGGGCCCCCATCTCCACC 1661893 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| | || || |||||| | || | ||||| || || | | || | |||||| Sbjct 1661892 ATGGTTTCCCCAAAGATGCCGTTAGGCCTGGGTTTCTCTACCAACAGACCTGGGTAGAGC 1661833 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || | || || || | | || | | | || || ||||| ||||| ||| Sbjct 1661832 TCCACAGCGTCAATGTTTCCGTACATCTCCTCGAGCACTGCGGCCATCTCTTTCTCTCCT 1661773 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| || || ||||| || || | | |||||| ||| || ||||| | | || | Sbjct 1660239 GATGAGCCGTGTGGTCTGGAAGAGCCTTTCGTCATTCCAGTCAGGGTGAACCTCCTTCAA 1660180 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || |||| ||||||||| | |||||| ||||||||||||||||| | ||| || Sbjct 1660179 CACATCACACACCCGGTTGTGTTCCCGCAGCCAGATGGTGGCGTACATCATCAGACCGGG 1660120 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881 || | || || | |||| ||||| || ||||| Sbjct 1660119 GACCAGGCCGAAAGCCTCATGACCCACAGCGAAGCG 1660084 Score = 87.8 bits (96), Expect = 3e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 9541 ATGCGAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCT 9600 ||| | ||| |||||||| ||| | |||||| |||| ||||| |||||||| | | Sbjct 1660769 ATGTGGAAAGAATCAGGCATCAGTGGGTGCCAGTGGTAAAGGGTGTTGAACTCAGATGAG 1660710 Query 9601 ATTCGGTTCTGGTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCT 9658 || ||||||||||| || ||| || ||| |||||| | || |||||||| | |||| Sbjct 1660709 ATGCGGTTCTGGTATTGGAAGCGCTGGT--TGAACAGCAGTTCTGGGTCAAACTTGAGCT 1660652 Query 9659 GGAAGTGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCC 9718 ||||| || || || || ||||| || || | ||| | ||| || ||||| || | Sbjct 1660651 TGAAGTTATAGCCACTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTC 1660592 Query 9719 C 9719 | Sbjct 1660591 C 1660591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723671060699600