Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq67 203 4e-47 seq30 98.7 1e-15 >seq67 Length=1635559 Score = 203 bits (224), Expect = 4e-47 Identities = 938/1462 (64%), Gaps = 46/1462 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | || | |||| ||||| |||| ||| || ||||||||| Sbjct 33331 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAG 33272 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || |||||||| | | || || |||| Sbjct 33271 GCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTTTCC 33212 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT-CTCCCCCTCCCACATATCAAACTGGAG 116081 || || | |||||| | || | || | | ||||||||| || ||||||| Sbjct 33211 TTCAGCAGCTTCCAGTCCAACA-GATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAG 33153 Query 116082 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACCTCCGC 116138 ||| || | | | || || || || | ||||| || ||||| |||| | || Sbjct 33152 GATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG---GC 33096 Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 || ||| |||||||||| ||||| |||| || || |||||||| || | |||| Sbjct 33095 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGATGTTCAG 33036 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258 || |||||| | ||||||| | ||| || || || ||||||| | ||| Sbjct 33035 CAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACC 32976 Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTC---CA 116314 ||| || |||| || ||||| | || | | | || ||||| || || | || || Sbjct 32975 TTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTC---CGCT-TCGGGCA 32920 Query 116315 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 116374 | ||||| || || | ||||| | | | || | ||| || | || || || | Sbjct 32919 CTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGACTTTGGTCA--- 32863 Query 116375 CATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG 116430 || || ||| ||| ||| |||||| | || ||| |||| ||| | || Sbjct 32862 CA-GATGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGTTGAGC 32807 Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 || || || ||||||||||| || | |||||| | ||||| || | ||||| Sbjct 32806 GCAATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCT 32747 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || || | || || || || ||||||| |||| || || |||| ||| || Sbjct 32746 GTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAG 32687 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || || ||||| ||||| || ||||| || || || || ||||||| | || || | | Sbjct 32686 GCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCGTGC 32627 Query 116611 CATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || || | | | | || || || ||| | | |||||||| ||| || ||||| Sbjct 32626 CACACCTGCTGAGCCTTCACCACACGC-TTGACCCTCCCCTCCTTCTCATATGAAGTGTA 32568 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 ||| ||||||||| |||||| | ||| ||||| || || || ||||| | Sbjct 32567 GAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACAT 32508 Query 116730 GAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786 |||||||| ||| | ||| || | ||||||||| | ||| |||||||| || Sbjct 32507 CAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAACAAGTCAGGGATCCACAG 32451 Query 116787 CGCCGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 116845 || |||| || || | | | ||| || | | || || || || ||||| Sbjct 32450 GGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCA 32392 Query 116846 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTG 116901 ||||| | | ||| ||||||||| |||||||||| |||| | || ||| Sbjct 32391 GGAAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTT 32332 Query 116902 CGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 | | || |||||| ||||| | |||||| ||| | || | ||||| || | Sbjct 32331 TGTTG-CCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACT 32273 Query 116962 ATACCATCAGATTGGCCATTTGTCCCCCGAATAC-GAGACTTGTTGGCTCTGACATCGTG 117020 | || | || | ||| ||||| || ||| | | ||||| ||||| | Sbjct 32272 AACCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTGA-TCTGATGCAGCT 32214 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 || || ||| || || || ||| |||||||||| | || |||| | | ||| || | Sbjct 32213 GACAGCCACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTC 32154 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 |||||| || ||||| ||| |||| | |||| ||||||||||| |||| || || Sbjct 32153 GTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGG 32094 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACA 117199 ||| ||||| || |||||||| || || | |||||| ||||| || | | |||| Sbjct 32093 CCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAAC-CACTTCTCCGACA 32035 Query 117200 TCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCC 117259 | | ||||||||| | | | | | ||||| | ||| || || | || |||| Sbjct 32034 GCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCC 31975 Query 117260 GCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCT 117319 ||| | ||||| |||||| ||| || | || | || | || | ||||| | Sbjct 31974 TCATGAGCATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACC 31915 Query 117320 TCTCCAAGGTCTTGAGACCAAA 117341 ||||| ||||||| ||||| Sbjct 31914 GCTCCAGAGTCTTGAAGCCAAA 31893 >seq30 Length=3550406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | |||| ||||| |||| ||| ||||| ||||| Sbjct 774268 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAA 774209 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| |||||||| Sbjct 774208 GCTGTGGGCATGGGGGCCAAGAGCAGGCTGTT 774177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613458932321040