Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq67 185 1e-41 seq30 98.7 2e-15 >seq67 Length=1635559 Score = 185 bits (204), Expect = 1e-41 Identities = 583/892 (65%), Gaps = 16/892 (2%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || ||||| || ||||| | ||| | || || | |||| || ||||||||| | Sbjct 32758 TCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTC 32699 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || ||||| |||| ||| ||||||| |||| ||||| | ||| | || |||| || | Sbjct 32698 TTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGA---C 32642 Query 205004 AGAATG-TGG-GT-CCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGA 205057 |||| ||| || ||||| | |||||| |||| |||| || | |||| | Sbjct 32641 TCAATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGCTTGAC---CCTCCCCTCC 32585 Query 205058 GACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA-CACGTCCATCAGCCCTGG 205116 ||| ||| ||||| ||| | |||| || ||| | ||| || |||||| || Sbjct 32584 TTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACAC-TCGTCCAGCCCGGG 32526 Query 205117 ACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAG 205176 ||| | |||||||||||||||||||| || | | || ||| |||| ||| |||| Sbjct 32525 ACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAA 32466 Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236 ||| |||||||||| |||| || || || | |||||| | || | ||| ||| Sbjct 32465 GTCAGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTT 32406 Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 ||| |||| ||||| ||| | | | ||| |||||||||||| | ||| ||| | Sbjct 32405 CTTCTTCAGCTCCAG-GAAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGA 32347 Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355 || || || || ||||| || |||||||| || || | | | |||| |||||| Sbjct 32346 AGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTC 32287 Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415 |||||| || || | ||||| | | | ||||| |||| | ||| ||| | Sbjct 32286 TCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTG 32227 Query 205416 CCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACT 205475 || | | | || ||| | || || || |||| |||| | ||| |||| |||| Sbjct 32226 ATCTGATGCAGCTGACAGCCACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACT 32167 Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACG 205535 | ||||||| |||||||||| ||||| |||||| || | | ||| |||| Sbjct 32166 GCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGC 32107 Query 205536 AAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGC 205595 | ||||| | |||||| || || | |||||| || || ||||||| |||| | Sbjct 32106 TGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACC 32047 Query 205596 GCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATAC 205655 |||||| || |||||||||| | | || | || | ||| || | Sbjct 32046 ACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGC 31987 Query 205656 CTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTGA 205715 | | | | |||||||| | ||| || |||| || ||| | |||| | ||| | Sbjct 31986 CAACAGAAACCCTCATGAGCATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCA 31927 Query 205716 GCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTC 205767 |||| |||| | ||| || || || | |||| |||||| ||| | |||| Sbjct 31926 GCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTC 31875 Score = 156 bits (172), Expect = 7e-33 Identities = 346/513 (67%), Gaps = 7/513 (1%) Strand=Plus/Minus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| | | || || | || || ||||||| ||||| ||| Sbjct 33459 CCTGAATGGATCCGTTGTTGCCAATGAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCC 33400 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | |||| || | ||| || || || | ||||||||| ||||| || || |||| Sbjct 33399 TCTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCC 33340 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | ||||| | |||||||||||| | ||||| | Sbjct 33339 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTG 33280 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 | ||| |||||||||||| || ||||| || ||| ||| | ||| |||| ||| || Sbjct 33279 CTGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGA 33220 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGA 204398 | | |||||| ||||||| || | |||| || ||||||||||| Sbjct 33219 TCTTTTCCTTCAGCAGCTTCCAGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCGT 33160 Query 204399 ACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCT 204457 |||| | ||| || | ||||| || ||| | ||||||| || ||| || ||| Sbjct 33159 ACTGGAGGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCA 33101 Query 204458 TCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACG 204517 | ||||||| ||| || ||| |||| ||||| |||||||||||||| || | | Sbjct 33100 GCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGATG 33041 Query 204518 TTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCG 204575 || | | ||| ||||| | | ||||||| || || || | || | |||| Sbjct 33040 TTCAGCAGCTG--CGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCG 32983 Query 204576 CCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 |||| || || || |||||||| | || |||| Sbjct 32982 CCAAACCTTGAACGCCGATTCCTATTGGCCTGT 32950 Score = 114 bits (126), Expect = 2e-20 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | |||||||| ||| || || || ||||| ||||| Sbjct 33719 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCCGCAATGTGGATGTT 33660 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 ||| |||||||| ||||||||||| |||||| || || || ||||| |||| | ||||| Sbjct 33659 CAGGGACTGGCTCTGGTCGATGAA-GGCGCCACGGTCGGCTGCCATCTTGAGCACGGTCT 33601 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || ||||||||||| || || Sbjct 33600 TCTGGGAGATCTCCCACACGGTTTT 33576 >seq30 Length=3550406 Score = 98.7 bits (108), Expect = 2e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | ||||||| | |||||||| ||| || || || ||||| || Sbjct 774751 CTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCAGCGATGTGGAT 774692 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||| | |||||||| ||||| || | |||| || |||||||| ||||| |||| |||| Sbjct 774691 GTTTAAGGACTGGCTCTGGTCAAT-ATAGGCACCACGATCTGCTGCCATCTTGAGGATGG 774633 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||||||| || || |||||||| || || Sbjct 774632 TCTTCTGGGAGATTTCCCACACAGTTTT 774605 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | | || | Sbjct 774303 TGACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAA 774244 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | ||||| || ||| || ||||||||||| |||| ||||| Sbjct 774243 TGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCA 774184 Query 204312 GGGAGTTGCGCACACC 204327 || ||| | |||||| Sbjct 774183 GGCTGTTCCTCACACC 774168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795092641164640