Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq331 132 5e-26 >seq331 Length=323222 Score = 132 bits (146), Expect = 5e-26 Identities = 150/200 (75%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || || |||||||||||||| || Sbjct 7737 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 7796 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||||| || | || ||||| ||| |||||| ||||| | Sbjct 7797 GATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 7856 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | || || || | |||||||| ||||| || || || || || Sbjct 7857 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 7916 Query 46582 AAAGATTTGCAT-TTTGCAC 46600 |||||| ||||| ||||||| Sbjct 7917 AAAGATCTGCATGTTTGCAC 7936 Score = 129 bits (142), Expect = 7e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || || | ||||| || || || | || |||||| ||||| || || Sbjct 7467 TTATTGACCGCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATA 7526 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || ||||| | || || ||||||||||| || || |||| | ||||||||| Sbjct 7527 GTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTC 7586 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 || || | || ||||| ||| |||||| ||||| || | | |||||||| | Sbjct 7587 GGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGG 7646 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| |||||||| ||||| || || || || |||||||| ||||| Sbjct 7647 CTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 7700 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || || | ||||| || || || | || |||||| ||||||||||| Sbjct 11270 TTATTGACCGCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTA 11329 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || ||||| | || || || ||||||||||| || |||| | ||||||||| Sbjct 11330 GTCGGAGAGGGTGCGGCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTC 11389 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || ||||| ||| |||||| ||||| || | | ||||| || | Sbjct 11390 AGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATAGTGTCACTTGG 11449 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575 || || || | |||||||| ||||| ||||| || Sbjct 11450 CTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGT 11485 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46415 TTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGC 46474 ||||||||||| || ||||| | || || |||||||||||||| || |||| | |||| Sbjct 12929 TTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGC 12988 Query 46475 TGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCG 46534 ||||| | || | || ||||||||| || || ||| | || | | |||||| Sbjct 12989 TGGTCAGGGGGAATGCCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTGTCG 13048 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || || | |||||||| ||||| || || || || ||||| || ||||| Sbjct 13049 CTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 13108 Query 46595 TT 46596 || Sbjct 13109 TT 13110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565193929868880