Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5 221 9e-52 seq2 125 5e-23 seq223 111 1e-18 seq631 100 2e-15 >seq5 Length=8875486 Score = 221 bits (244), Expect = 9e-52 Identities = 942/1474 (64%), Gaps = 17/1474 (1%) Strand=Plus/Plus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| ||||| ||||||||||| | || || || || || | || ||||| |||| Sbjct 3524279 CACATTCAGAATTCCATTGGCATCAATGTCGAAGGTTACCTCCACCTGTGGGACACCTCG 3524338 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 ||||||| ||||| ||| | | ||| | || || || || || || || | Sbjct 3524339 GGGAGCAGGAGGGATACCTGTGAGCTCAAACTTGCCGAGGAGGTTGTTGTCCTTGGTCAT 3524398 Query 517384 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 517443 || |||||||| | | || || || | | || ||||||||||| || | Sbjct 3524399 GGCTCTCTCACCCTCATACACCTGAATCAGCACACCTGGCTGGTTATCTGAATATGTAGA 3524458 Query 517444 AAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 517502 || | ||||| | | || || || || ||||||| | || | | ||||||| Sbjct 3524459 GAAGA-TCTGGGTCTGCTTGGTGGGGATGGTGGTGTTTCGTTTGATTAAAGGTGTCATAA 3524517 Query 517503 TACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 517562 |||||||| || || | || ||||| ||||||| ||||| | || | | || || Sbjct 3524518 CTCCACCTGCAGTCTCAATGCCCAGAGACAGAGGAGCCACATCCAGCAGTAGCAAATCTT 3524577 Query 517563 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 | | ||||| ||| | ||| | || ||||| || || | || |||||||| || | Sbjct 3524578 GGACATTTTCTGAAGTGTCACCCATCAGGATAGCAGCCTGGACTGCTGCACCATAGGCCA 3524637 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 517681 |||||||||| || || | | | || | || | | ||||| ||||| | || |||| Sbjct 3524638 CAGCTTCATCTGGGTTGATGCTCTTGTTCAATTCTCTGCCATTAAAAAAGTCCTGCAAGA 3524697 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 || | | || ||||| | | || || ||||| | || |||||||| | || Sbjct 3524698 GCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACGATTTCATGGATCTTG 3524756 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 || |||||||| || | ||| | | || ||||| || || || | || || Sbjct 3524757 GACTTATCCAGCTTGGCATCTTGCAGAGACTTCTCAACTGGATCCAGTGTTCCCCTGAAG 3524816 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 517859 | ||||| || || || || || || || || ||| | || || || || | Sbjct 3524817 AGCTCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATTGAGGTGTAGAAGTCGATAC 3524874 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 517919 | || |||| ||| |||| |||| ||| || || || || || | | || | Sbjct 3524875 CCTCAAACAGAGAGTCAATCTCAAGGCTAGCCTGGGTGCTGGAGGACAGGGTCCTCTTTG 3524934 Query 517920 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGT 517977 | | |||||| || || | ||||| | | ||| | || ||| | | | || | Sbjct 3524935 CTCTTTCACAAGCAGTGCGCAGTCTCCTCACTGCTCT--CTTATTTTGGCTGATGTCCTT 3524992 Query 517978 TTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTC 518037 || | |||||| || || || || ||| | | || | || || ||||| || || Sbjct 3524993 CTTGTGTTTTCTTTTAAATTCCTCTACAAAGTGGTTGACCATCCGGTTGTCAAAGTCCTC 3525052 Query 518038 ACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGA 518097 || || | | || | |||| || | | | |||| |||| || ||||||| | Sbjct 3525053 CCCACCAAGATGTGTGTCGCCTGCAGTGGATTTCACTTCAAAAATGCCGTCTTCAATGGT 3525112 Query 518098 CAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTT 518156 || | | || ||| ||| || ||||| | |||||| || || || || | | | Sbjct 3525113 CAGGATGGACACGTCAAAGGTGCCTCCACCGAGATCAAAGATGAGCACGTTGCGCTCCCC 3525172 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 | | || ||| ||| || || || || | || || || || || ||||| || || | Sbjct 3525173 TCTTTTACCTTT-ATCCAGGCCGTAGGCGATGGCTGCTGCTGTGGGCTCATTTATGATCC 3525231 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 ||| |||||| || |||| || || || || || |||||||| || || || || | Sbjct 3525232 TCAGAACATTCAGTCCAGAGATCACCCCAGCGTCCTTGGTGGCTTGCCTCTGGGAGTCAT 3525291 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTG 518336 ||||||| || ||||| || || || || | | |||| || || | || || | Sbjct 3525292 TAAAATAAGCTGGAACTGTGATGACTGCGTTTGACACTTTTTGTCCCAGGTAGGCTTCAG 3525351 Query 518337 CCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGG 518396 | | | ||||||||| | | ||| || || |||| ||||||| | | |||| Sbjct 3525352 CGATCTCCTTCATTTTAACCAGGACCATGGAGGAGATTTCTTCTGGGTAGAAGGCTTTGG 3525411 Query 518397 ATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATG 518456 || || ||| || | | | ||||| | | |||| || ||||| || | Sbjct 3525412 TCTCCCCTTTATACTCAACCTGGACTTTGGGTTTTCCGCTATCATTGATCACTTTGAAGG 3525471 Query 518457 GCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 518516 ||||| ||||| || || || ||| |||| |||| | ||| || || | | | Sbjct 3525472 GCCAGAGCTTCATGTCAGACTGGACAACAGGGTCGGTAAACTTTCTCCCGATGAGCCTCT 3525531 Query 518517 TTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAA 518576 | |||||||| || || ||| || || || ||| | |||| ||||| |||||||||| Sbjct 3525532 TGGCATCAAAGATTGTGTTGACGGGGTTCATGGCAACCTGATTCTTGGCAGCATCTCCAA 3525591 Query 518577 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 518636 | || ||||| || ||||| | ||||| ||||| || | || || || || | Sbjct 3525592 TGAGCCTCTCTGTGTCAGTAAAGGCCACATAGCTGGGAGTGGTTCTGTTTCCCTGGTCGT 3525651 Query 518637 TCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTA 518696 | || || || || ||||| |||| || | || || |||||| | | || || || | Sbjct 3525652 TGGCGATGATCTCCACTTTGCCATGCTGGAAAACCCCGACACAAGAATAGGTGGTGCCCA 3525711 Query 518697 AATCAATACCAATAGCAAT---TTTATCTGACAT 518727 |||||| ||||||| || |||| ||||||| Sbjct 3525712 GATCAATGCCAATAGATATTCCTTTAGCTGACAT 3525745 >seq2 Length=11018341 Score = 125 bits (138), Expect = 5e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| || ||||||||||| ||||| || || | || ||| Sbjct 7191316 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTTGGCTCATTGATGATGCGCAGCACA 7191375 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||||||| |||| ||||||||||||||||| | || || || || || || Sbjct 7191376 TTAAGCCCAGCAATGGTTCCAGCATCTTTAGTGGCTTGACGCTGGGAGTCATTGAAGTAA 7191435 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| |||||||| |||| Sbjct 7191436 GCAGGAACTGTAATAACTGCAT 7191457 Score = 95.1 bits (104), Expect = 9e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| ||| | |||| ||||| ||||| ||||||||||| | ||||| || || ||||| Sbjct 7190093 TTTGTCAACTGCAGATACATTGAGAATGCCATTGGCATCAATGTCAAAAGTCACCTCAAT 7190152 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 |||||||| ||||| | |||||||| || || || | |||| | |||||| |||| Sbjct 7190153 CTGAGGGACACCTCTGGGTGCAGGTGGAATACCAGTCAGCTCAAATTTGCCCAGAATATT 7190212 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTC 517398 ||| || || || | || |||||| || Sbjct 7190213 ATTGTCCTTGGTCATGGCTCTTTCACCTTC 7190242 >seq223 Length=448970 Score = 111 bits (122), Expect = 1e-18 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| ||||||||||||||||||||| || || | || ||| Sbjct 201850 TTTTTGTCGAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGCAGCACA 201909 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| | ||||||||||| || || || | || || || || || || Sbjct 201910 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAG 201969 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| ||||| | || |||| |||||| Sbjct 201970 GCAGGCACAGTCACTACAGCATTAGTTAC 201998 >seq631 Length=169947 Score = 100 bits (110), Expect = 2e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| ||||||||||||||| ||||| || || | || ||| || || |||| Sbjct 157153 CCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGCAGAACGTTGAGGCCAGAG 157212 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| |||| ||||| |||||||| || | || || ||||| || || || || || ||| Sbjct 157213 ATTGTTCCAGCATCCTTAGTGGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGTACCGTA 157272 Query 518297 ATAACGGCAT 518306 || || |||| Sbjct 157273 ATTACAGCAT 157282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780510070987564