Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq67 250 3e-61 seq30 95.1 1e-14 seq508 84.2 3e-11 >seq67 Length=1635559 Score = 250 bits (276), Expect = 3e-61 Identities = 968/1492 (65%), Gaps = 42/1492 (3%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| || || Sbjct 33425 CTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGATTCAC 33366 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||||||| | |||| || | |||||||| | ||||||| ||| | Sbjct 33365 GATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 33306 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | || || || |||| ||| ||||| |||||||| || ||||| || |||| || || Sbjct 33305 AGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAG 33246 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 106080 ||||| | | || | || ||| |||||| || | | |||||| | || Sbjct 33245 GCTGTTCCTCACGCCGTGTTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCAACA-GAT 33187 Query 106081 C--TTGGTTTCACCTTCCCACATATCAAATTGAAGCA-CCCCTTGG-GACGTGGGAGAAC 106136 | | || || || ||||||| || | || || | ||||||| ||| ||||| | Sbjct 33186 CGGTGGGCGTCTTCT-CCCACATGTCGTACTGGAGGATCCCCTTGCTGACC--GGAGAGC 33130 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 | || | ||||| |||| || | | | |||| || |||||||||||||||| | Sbjct 33129 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 33070 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 ||| || ||||| |||||||| | |||| | || || || ||||| | Sbjct 33069 CGTAGTAGATGGTCTCAAAGATTTGGATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACG 33010 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 ||| || || || || ||||||| | ||||||||| || | || || || |||| Sbjct 33009 GGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCGATTCCTATTGGCCTGT 32950 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 | ||| | || ||||| ||| || ||||| || || | || |||| || Sbjct 32949 GACGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCTCGATGATCTTGT 32890 Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTCA--TGA-AGTTTTTCATAATCAAAAGTGC 106433 | | ||| || ||||| | || | || || ||||||| | | |||||||| | Sbjct 32889 TCAAGTTTCTG---ACAATGACTTTGGTCACAGATGCTAGTTTTTTAAAGTCAAAAGTCC 32833 Query 106434 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 | ||| |||| ||| | || || || || |||| ||| || || || || Sbjct 32832 G---CTCAGGGGTGACGTACATGTTGAGCGCAATGGAGGCCAGATTACAGACCGCTACCT 32776 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 |||| | ||||| || | |||||||| || | |||| || || || || |||| Sbjct 32775 CATCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCA 32716 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 ||||| ||||| |||||| |||||| || || ||||| |||||||| ||||| || | Sbjct 32715 GATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGG 32656 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTG 106672 | || ||||| |||| | || || | |||||| | | | | || || || ||| Sbjct 32655 TTTCTGTCTGGGACTCAATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGC-TTG 32597 Query 106673 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA-CCCACCGCGTC 106731 ||| |||||| ||| || |||||||| |||||||||||| |||| | | || Sbjct 32596 ACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACAC-TC 32538 Query 106732 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTCCTCAAC 106788 | || || || || | ||||| | |||||||| ||| | ||| || Sbjct 32537 GTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---AC 32481 Query 106789 CCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTC 106848 | ||||||||| | ||| || |||||||||| | || || ||||| || ||| Sbjct 32480 TCTCTTCATGAACAAGTCAGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTC 32421 Query 106849 TTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 106907 || | ||| ||| || | | ||| ||||| || | | ||| |||||| |||| Sbjct 32420 CTCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCACGGCT 32362 Query 106908 CAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCT 106963 | || || | |||| | ||| |||| | | || | || | ||||| ||||| Sbjct 32361 CCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTG-CCGCCCTGGTCGACATAACGCGCC 32303 Query 106964 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 107023 ||| ||| | || | ||||| || | | || | ||| | || ||||| || | Sbjct 32302 GTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCA 32243 Query 107024 ATACGAGATTTAT-TGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCCCAC 107080 || || | | | | ||| | || | || || || || || |||||| || Sbjct 32242 AT-GTAGCTCCCTGTTGATCTGATGCAGC--TGACAGCCACACCGATTCCTCCAGCCGAC 32186 Query 107081 TTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG 107140 |||||||| | ||||||| | | ||||| | ||||| || | ||| ||| ||||| Sbjct 32185 TTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTC 32126 Query 107141 TTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTT 107200 |||||| |||||||| ||||||| ||| || || ||||| ||||||||||| || Sbjct 32125 ATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTA 32066 Query 107201 GGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATC 107259 || | ||||| ||||| || | | |||| | || ||| ||||| | | | | || Sbjct 32065 GGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTC 32007 Query 107260 AATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 ||||| | ||||||||| | | || | ||| | ||||| |||||| Sbjct 32006 GATGTCCGTTCTGTGGATGCCAACAGAAACCCTCATGAGCATGTGCTGGGGT 31955 >seq30 Length=3550406 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||||| || ||||| |||| |||| || || || |||| |||| ||| Sbjct 773353 GTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGG 773294 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| ||||| ||||||||||| |||||||| || || ||||| |||||||| Sbjct 773293 TTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCTGA 773234 Query 106625 GACTTGAGAATTGCCTTCCACA 106646 |||| || || || | ||||| Sbjct 773233 GACTCGATGATGGCGTACCACA 773212 >seq508 Length=211378 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| || ||||| |||||| || || ||||| || || | ||||| Sbjct 169635 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCAGGCATTAGCCCTCTCTTCT 169576 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 | | |||||| || || |||||| || |||||||||||||||||||| Sbjct 169575 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCAC 169527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589934383260560