Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 179 3e-39 seq2 127 2e-23 seq223 113 4e-19 seq631 109 4e-18 >seq5 Length=8875486 Score = 179 bits (198), Expect = 3e-39 Identities = 451/680 (66%), Gaps = 4/680 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 |||||||| |||||||| || | | || || || | || || | | |||| | Sbjct 3524950 ACTGCTTGTGAAAGAGCAAAGAGGACCCTGTCCTCCAGCACCCAGGCTAGCCTTGAGATT 3524891 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || | |||||||| || || | | || | || | ||||| ||||| || Sbjct 3524890 GACTCTCTGTTTGAGGGTATCGACTTCTACACCTCAATCACAAGGGCACGCTTTGAGGAG 3524831 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTT-TAAGAGATTC 552091 | || || ||||| || |||| | || ||||| || |||| | | |||| | Sbjct 3524830 CTCAACTCAGAGCTCTTCAGGGGAACACTGGATCCAGTTGAG-AAGTCTCTGCAAGATGC 3524772 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | ||||| ||||| | |||||||| || || |||||||| || ||||||||||| Sbjct 3524771 CAAGCTGGATAAGTCCAAGATCCATGAAATCGTCCTGGTTGGTGGCTCCACAAGAATTCC 3524712 Query 552152 TAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTA 552210 ||||| | | | || || ||| ||| ||||| | | |||| || | || | | Sbjct 3524711 CAAAATCCAGAAGCTCTTGCAGGACTTTTTT-AATGGCAGAGAATTGAACAAGAGCATCA 3524653 Query 552211 ATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAA 552270 | |||||||| ||||| ||||||||||| ||| | || || ||||| || || | | Sbjct 3524652 ACCCAGATGAAGCTGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCTGATGGGTGACA 3524593 Query 552271 CTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 || ||||| | ||| || | |||| | ||||| ||||||| ||||| || | | Sbjct 3524592 CTTCAGAAAATGTCCAAGATTTGCTACTGCTGGATGTGGCTCCTCTGTCTCTGGGCATTG 3524533 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390 | || | || || ||||||| | | ||| | |||| || || || || || Sbjct 3524532 AGACTGCAGGTGGAGTTATGACACCTTTAATCAAACGAAACACCACCATCCCCACCAAGC 3524473 Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450 | | | | || ||||| ||||||||||| || | | ||| ||||| | | || Sbjct 3524472 AGACCCAGATCTTCTCTACATATTCAGATAACCAGCCAGGTGTGCTGATTCAGGTGTATG 3524413 Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510 | || || ||| | || || || || || | || || | ||| | | ||||| Sbjct 3524412 AGGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTCACAGGTA 3524353 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | ||||||||||| || || || || || | || || || ||||| || |||||||||| Sbjct 3524352 TCCCTCCTGCTCCCCGAGGTGTCCCACAGGTGGAGGTAACCTTCGACATTGATGCCAATG 3524293 Query 552571 GAATTTTGAATGTGACTGCT 552590 ||||| |||||||| | ||| Sbjct 3524292 GAATTCTGAATGTGTCCGCT 3524273 Score = 136 bits (150), Expect = 3e-26 Identities = 384/587 (65%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 549990 TAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTA 550049 || |||| || || ||| | || ||||| ||| |||||| || |||| || |||| | Sbjct 3525729 TATCTATTGGCATTGATCTGGGCACCACCTATTCTTGTGTCGGGGTTTTCCAGCATGGCA 3525670 Query 550050 AAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCA 550109 |||| || || || ||||| || || || |||||||| ||||| ||||| | || | Sbjct 3525669 AAGTGGAGATCATCGCCAACGACCAGGGAAACAGAACCACTCCCAGCTATGTGGCCTTTA 3525610 Query 550110 CGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTA 550166 | || || || | |||| ||||| || || |||| | ||| || || || Sbjct 3525609 CTGACACAGAGAGGCTCATTGGAGATGCTGCCAAGAATCAGGTTGCCA-TG--AACCCCG 3525553 Query 550167 CCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTC 550226 ||| || || |||||||| || | | || || |||| |||| || | ||| | Sbjct 3525552 TCAACACAATCTTTGATGCCAAGAGGCTCATCGGGAGAAAGTTTACCGACCCTGTTGTCC 3525493 Query 550227 AGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTG 550286 || | || ||||||| ||||| ||| || | | |||| | |||||||| | | Sbjct 3525492 AGTCTGACATGAAGCTCTGGCCCTTCAAAGTGATCAATGATAGCGGAAAACCCAAAGTCC 3525433 Query 550287 AAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | | || |||| ||| || | |||||| |||| || || ||||| Sbjct 3525432 AGGTTGAGTATAAAGGGGAGACCAAAGCCTTCTACCCAGAAGAAATCTCCTCCATGGTCC 3525373 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | |||||||| | | || || | | || ||| |||| | | ||||| | Sbjct 3525372 TGGTTAAAATGAAGGAGATCGCTGAAGCCTACCTGGGACAAAAAGTGTCAAACGCAGTCA 3525313 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || ||||| |||||||||||||| || | ||||| || || || ||||| | Sbjct 3525312 TCACAGTTCCAGCTTATTTTAATGACTCCCAGAGGCAAGCCACCAAGGACGCTGGGGTGA 3525253 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | ||||||| |||||||| | || || ||||| || || || || || | || || | Sbjct 3525252 TCTCTGGACTGAATGTTCTGAGGATCATAAATGAGCCCACAGCAGCAGCCATCGCCTACG 3525193 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 | || |||||| ||| || | || || |||||||||||| Sbjct 3525192 GCCTGGATAAAGGTAAAAGAGGGGAGCGCAACGTGCTCATCTTTGAT 3525146 >seq2 Length=11018341 Score = 127 bits (140), Expect = 2e-23 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| |||||||||| Sbjct 7191457 ATGCAGTTATTACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACTAAAGATG 7191398 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| |||||||| || || || |||||||| || |||||||| || Sbjct 7191397 CTGGAACCATTGCTGGGCTTAATGTGCTGCGCATCATCAATGAGCCAACTGCTGCAGCCA 7191338 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 7191337 TTGCTTATGGCCTGGACAAA 7191318 >seq223 Length=448970 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||| || || || || |||||||| || || || ||||| ||||||| Sbjct 201991 ATGCTGTAGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCTACCAAAGATG 201932 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 201931 CAGGGACCATTTCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACTGCTGCTGCTA 201872 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 201871 TTGCTTATGGCCTCGACAAA 201852 >seq631 Length=169947 Score = 109 bits (120), Expect = 4e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || ||||| || || || || ||||| || ||||| || ||||| |||| Sbjct 157282 ATGCTGTAATTACGGTACCCGCCTACTTCAACGACTCCCAGCGTCAGGCCACTAAGGATG 157223 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||| || || ||||| ||||| |||||||| || ||||||||||| Sbjct 157222 CTGGAACAATCTCTGGCCTCAACGTTCTGCGTATCATCAATGAGCCAACTGCTGCTGCTA 157163 Query 550518 TTGCATATGG 550527 |||| ||||| Sbjct 157162 TTGCTTATGG 157153 Score = 105 bits (116), Expect = 5e-17 Identities = 107/138 (78%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 550395 CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAG 550454 || |||| || || || ||||| ||||| |||||||| || ||||||||||| || || | Sbjct 169591 CGAATGCTGTTATCACAGTACCTGCATACTTTAATGATTCTCAACGTCAAGCAACCAAGG 169650 Query 550455 ATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTG 550514 |||||||| ||| |||| || ||||| | | || |||||||| || |||||||| | Sbjct 169651 ATGCTGGAACTATCTCTGGGCTAAATGTGTTGAGAATAATCAATGAGCCCACTGCTGCAG 169710 Query 550515 CACTTGCATATGGACTTG 550532 | |||| ||||| |||| Sbjct 169711 CTATTGCTTATGG-CTTG 169727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028963144894060