Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq95 152 4e-32 seq90 104 2e-17 >seq95 Length=1145539 Score = 152 bits (168), Expect = 4e-32 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | ||||||||||| || || || Sbjct 863712 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCGATATTGAAAGGC 863653 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 |||||||| ||||| || || || | |||||| ||||||||||| ||||| || |||| | Sbjct 863652 ACCCCGAGGCCCATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGCAC 863593 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||||| |||||||||| || |||||| || || |||||||||| | || |||| Sbjct 863592 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAAGGGCAGGTCT 863539 Score = 136 bits (150), Expect = 3e-27 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| ||||||||||| || || || ||||||||||| || ||||| ||||||||||| Sbjct 863009 CATGTCTGTGTACTCTGCACCAAAGTGTCTCCACTGGAAGCCATACACGGGTCCCAGGTC 862950 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || || || | ||| || ||||||| ||||||| || ||||||||||| Sbjct 862949 GCCTTCCTCTCTATCTGTGAACCCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCGTC 862890 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| ||||| || || ||||| |||||||| |||| ||||| || || Sbjct 862889 CCAAATCTTCACTCCTTTCTCAGAGAGCTCCTTGGCATTTGTTGATCC 862842 >seq90 Length=1194800 Score = 104 bits (114), Expect = 2e-17 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 112261 AGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACG 112320 ||||| |||||||||||||||| | ||| ||||||||||| |||| ||| |||||||| Sbjct 223833 AGTCTAACAGGATGCCACGGCAGCTTTCCATTGTTCCCGATACCCAGGTCAGGACACACC 223774 Query 112321 GCCACGATACCGTTCAGAATGAGGG 112345 ||||| ||||||||||||||| ||| Sbjct 223773 GCCACAATACCGTTCAGAATGCGGG 223749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408586255710062