Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq67 419 4e-112 seq20 178 2e-39 seq683 163 5e-35 seq1442 122 2e-22 seq121 122 2e-22 seq508 107 4e-18 seq30 105 1e-17 seq77 100 5e-16 seq6 91.5 3e-13 >seq67 Length=1635559 Score = 419 bits (464), Expect = 4e-112 Identities = 1042/1567 (66%), Gaps = 40/1567 (3%) Strand=Plus/Minus Query 212858 CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTAT 212917 ||| ||||||||||| || ||||| | |||| |||| ||| ||||| || || || Sbjct 33422 CATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGATTCACGAT 33363 Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || || ||||| ||||| | ||| | ||| ||||||| ||||| Sbjct 33362 CTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGA 33303 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| |||||||| ||| ||| |||||||| || |||| ||| || || Sbjct 33302 CTCGTTGTTGCCCAGGATCTGTGCTGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAGGCT 33243 Query 213038 GTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGA 213097 ||||||||| ||||| | | |||| | ||| ||||||| | |||| Sbjct 33242 GTTCCTCACGCCGTGTTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCAA-----CAGA 33188 Query 213098 CAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCT 213157 ||| |||| ||| | ||||||||| |||| | ||| || ||||| || || Sbjct 33187 TCGGTGGGCGTC-TTCTC---CCACATGTCGTACTGGAGGATCCCCTTGCTGACCGGAGA 33132 Query 213158 GCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGC 213217 ||| | ||| | ||||||||| |||| ||||||||||||| ||||| |||||| Sbjct 33131 GCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGC 33072 Query 213218 AGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGG------A 213271 |||||||||||||| ||||| || | |||| ||| || ||||| ||| | Sbjct 33071 GGCGTAGTAGATGGTCTCAAAGATTTGGATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAA 33012 Query 213272 CGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGAT 213331 || | | |||||| ||| || |||| |||| || || || ||||| || || Sbjct 33011 CGGGTAACGCATCAGGATG------AAGGCATCCGCCAAACCTTGAACGCCGATTCCTAT 32958 Query 213332 GGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGAT 213391 || ||||| | | ||| ||||| || || || || ||||| ||||| Sbjct 32957 TGGCCTGTGACGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCTCGAT 32898 Query 213392 GATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAA 213451 ||||||||| | ||| | | |||||||| ||| || || | | | | || Sbjct 32897 GATCTTGTTCAAGTTTCTGACAATGACTTTGGTCACAGATGCTAGTTTTTTAA-AGTCAA 32839 Query 213452 CACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGC 213511 | || | | | || || || || || ||| |||||| || || || || Sbjct 32838 AA-GTCCGCTCAGGGGTG-ACGTACATGTTGAGCGCAATGGAGGCCAGATTACAGACCGC 32781 Query 213512 CACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGT 213571 ||||| | | ||||| || | ||| || ||||| |||||||||| | ||| || Sbjct 32780 TACCTCATCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGT 32721 Query 213572 GCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGA 213631 |||||| ||||| ||||| |||| |||| | || ||||| |||||||| || | Sbjct 32720 GCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGT 32661 Query 213632 CCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCG 213691 ||||| ||| ||||||| | | || | ||| | | | ||||| ||||| || Sbjct 32660 ACCGGTTTCTGTCTGGGACTCAATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACG 32601 Query 213692 CCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCA 213751 | |||| |||| | | ||| || |||||||| | || || | ||||| Sbjct 32600 CTTGACC-CTCCCCTCCTT--CTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCA 32544 Query 213752 GACCCT-GTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTC 213810 || || |||||| || ||||| ||||||||| || |||||| || | Sbjct 32543 -ACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTT 32485 Query 213811 TGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCC 213870 ||||||| |||||||| ||| |||| |||||| ||| ||| ||||| |||| |||| Sbjct 32484 CCACTCTCTTCATGAACAAGTCAGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCT 32425 Query 213871 TCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACG 213930 ||| ||| ||| | ||| || ||| || || |||||||| | || |||||||| Sbjct 32424 GCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCACG 32365 Query 213931 GCTCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTGGTCCACCAGCCTGG 213987 |||||| ||| ||||| ||||| || || | | |||||||||||||| || | | Sbjct 32364 GCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGCG 32305 Query 213988 CCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCG 214047 || ||||| | | | ||| | ||| || | |||||| || | ||||| || || | Sbjct 32304 CCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGG 32245 Query 214048 CTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACT 214107 | || || || | | || | | ||| | | | || || || || || ||| Sbjct 32244 CAATGTAGCTCCCTGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCAGCCGACT 32185 Query 214108 TGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGA 214167 | ||||| | ||| || || ||| ||| || |||||| | |||||||| || | | Sbjct 32184 TTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCA 32125 Query 214168 GGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGG 214227 | |||| ||||||||| || ||||| |||||| | || | ||||| || || | Sbjct 32124 TGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAG 32065 Query 214228 GGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGA 214287 | ||| ||| | | |||| | || || || |||||||||| | | ||| | || Sbjct 32064 GCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGA 32005 Query 214288 TGT-CGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATG 214346 ||| ||| | ||||||| | || |||||| |||||||||||||| | || | Sbjct 32004 TGTCCGTTC-TGTGGATGCCAACAGAAACCCTCATGAGCATGTGCTGGGGTCGTTC---G 31949 Query 214347 GGTCCTTT---GGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 | |||| | | ||| ||||||||||| ||||||||||||||||| |||||| || Sbjct 31948 GCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAG 31889 Query 214404 GAGTAGG 214410 ||||| Sbjct 31888 TTGTAGG 31882 >seq20 Length=4244138 Score = 178 bits (196), Expect = 2e-39 Identities = 175/225 (78%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 241403 CACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCG 241462 |||||||| || ||| | |||||||||||| |||||||| || | ||| | || || Sbjct 2276994 CACATGTGTCAT--GACTTTCTGTTTGAGTTGAGCCACCTGCTCTCTCAGTAGAGAAGCC 2277051 Query 241463 GTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCG 241522 || || || ||||| |||||||| | || | ||||||||| || |||||||| || | | Sbjct 2277052 GTGTTTGAGAGTCCGGCGTTGTCTGTTTTCAACACCTTCACCTTGTCCTCCAGGCGAGAG 2277111 Query 241523 ATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTA 241582 ||||| ||||||||||||| || || |||| |||||| | ||||||| || | ||| Sbjct 2277112 ATGCGCTCCAGTTTGCGCCTCCGACACTTGGAGGCTGCGAGCCGGTTCCTCAGCCGCTTG 2277171 Query 241583 CGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || ||||| ||||| || ||||||| |||||| ||||| |||||| Sbjct 2277172 CGCTCCGCTTTGATCCGCTCCTGGTTCTCCATATCGATGGGAGAC 2277216 >seq683 Length=153219 Score = 163 bits (180), Expect = 5e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| || || ||| |||||| | ||||||||| || || || || |||| Sbjct 63082 GCTGACAGCCGCTGCTCACGTGTGTCAGGACTTTCTGTTTGAGCTGAGCGACTTGATCCC 63023 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || || ||||| || |||||||| || |||||| ||| | ||||||| |||| Sbjct 63022 GGAGCACCGACGCCGTGTTGGACAGCCCCTGGTTGTCGTTCTTCAATCCCTTCACCTTCT 62963 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| |||||||| ||||||||||||| ||||| |||||||| || | |||| Sbjct 62962 CCTCCAGCCGGGCGATGCGCTCCAGTTTGCGCCTCCGGCACTTGGTGGCAGCTAGCCGGT 62903 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGAT 241596 ||| || ||||| || ||||| ||||| Sbjct 62902 TCCTCAGCCTCTTGCGCTCCGCTTTGAT 62875 >seq1442 Length=51939 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 241390 CTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCG 241449 ||| ||||| | | | ||| | || ||||| ||||||||| || || || || ||||| Sbjct 37844 CTGGCAGCCGTTGGTGACGTGACTCATGACCTTCTGTTTGAGCTGAGCGACTTGCTCCCG 37903 Query 241450 CAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTC 241509 ||| | || || || || ||| | | ||| | ||| || |||||||| ||||| Sbjct 37904 CAGCATGGCGGCAGTGGAGGCCAGGTCCGAGTTCTGGCTCTTCAGGACCTTCACCTTCTC 37963 Query 241510 CTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTT 241569 ||||||||| | ||| || ||||| || || ||| || |||| || || | ||| || Sbjct 37964 CTCCAGCCGTGAGATCCGCTCCAGCTTCCGTTTGCGACACTTGGAAGCAGCAATGCGATT 38023 Query 241570 CCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || || |||| ||||| || ||||| |||||||| ||||| ||| ||||| || Sbjct 38024 GCGCAGCTTCTTGCGTTCTGCTTTGATTCGTTCCTGTGTCTCCAGGTCAATCGGGGA 38080 >seq121 Length=790554 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 241418 ACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC---AGT 241474 |||| ||| || || ||||||||||| || ||||| | | ||||| |||| || Sbjct 453920 ACCTTCTGCTTCAGCTGGGCCACCTGCTCACGCAGCATGTTGGCGGT---GGACGCGAGC 453864 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||||| ||| ||||| |||||||||| | ||| || ||||| Sbjct 453863 TCAGAGTTTTGGGACTTGAGGGTCTTGACTTTGTCCTCCAGCCTTGAGATTCGCTCCAGC 453804 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||||||| ||| || | |||||||| | | ||| | || |||||| Sbjct 453803 TTCCTCTTCCGGCATTTGGAGGCAGCGATGCGGTTCCTCATCCGCTTTCTCTCGGCCTTG 453744 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| ||||||| |||||||||||| || || Sbjct 453743 ATGCGCTCCTGGTTCTCCATGTCGATTGGGGA 453712 >seq508 Length=211378 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || |||| ||| || ||| | ||||||||| ||||||||||| | ||| |||| ||| Sbjct 169633 TCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCAGGCATTAGCCCTCTCTTCTTG 169574 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| | || || ||||| ||||| ||||||||||| ||||||||||| ||||| || Sbjct 169573 AGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCACTGCTGCGAAAGC 169515 >seq30 Length=3550406 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || |||||||||||||| | ||| | ||| ||||||| ||| ||| Sbjct 774299 CTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATGGA 774240 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| |||||||||||||| |||| || || || Sbjct 774239 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGGCT 774180 Query 213038 GTTCCTCACTCCGTGC 213053 ||||||||| || ||| Sbjct 774179 GTTCCTCACACCATGC 774164 Score = 100 bits (110), Expect = 5e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | |||||| ||||||||||||||| || |||||||||||||||||| ||| Sbjct 773353 GTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGG 773294 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGG 213630 || ||| | ||| | ||||||||| |||||||| |||| Sbjct 773293 TTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGG 773251 >seq77 Length=1416746 Score = 100 bits (110), Expect = 5e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | |||||| || |||||||| || |||| | | | || || || ||| Sbjct 1252025 AGGACTTTCTGTTTCAGCTGGGCCACTTGCTCCCTTAACAGGCTAGCCGTGGAGGCCAGG 1252084 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||||| ||| ||| ||||| || |||||||||| | ||| || |||||| Sbjct 1252085 TCGGTGTTGTGGCTCTTCAGCGTTTTCACCTTGTCCTCCAGCCTGGAGATCCGCTCCAGT 1252144 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| || || |||| |||||| | ||||||| ||| ||||| | || || || Sbjct 1252145 TTGCGCATCCGACACTTGGAGGCTGCAATCCGGTTCCTGAGCCTCTTCCTCTCGGCTTTC 1252204 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||| | ||||| || |||||||| |||||| Sbjct 1252205 ATGAGCTCCTGTGAATCAATGTCGATGGGAGAC 1252237 >seq6 Length=7996890 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 241418 ACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCT 241477 |||| ||| || || |||||||| || |||| || ||| || || | ||| | Sbjct 3172720 ACCTTCTGCTTCAGCTGGGCCACTTGCTCCCTGAGGACGCTGGCCGTGGATGCCAGCTCG 3172779 Query 241478 GCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTG 241537 | ||| | | || || ||| || || ||||||||||| | || | |||||||| Sbjct 3172780 GTGTTCTGCGTTTTCAGGCTCTTGACCTTGTCCTCCAGCCGAGATATCCTCTCCAGTTTT 3172839 Query 241538 CGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATG 241597 | ||||||||||| ||| || | | ||||| || | || | |||||||||||| Sbjct 3172840 CTTTTGCGGCATTTGGAGGCGGCTATCCTGTTCCTCAGCTTTTTTCTCTCCGCCTTGATG 3172899 Query 241598 CGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || ||||||| |||||||| || |||||| Sbjct 3172900 CGCTCCTGGTTGTCCATGTCAATAGGAGAC 3172929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931459511656960