Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq67 273 4e-68 seq134 89.7 1e-12 seq30 87.8 3e-12 >seq67 Length=1635559 Score = 273 bits (302), Expect = 4e-68 Identities = 841/1281 (66%), Gaps = 36/1281 (3%) Strand=Plus/Minus Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGC 221416 |||||| || ||||||| ||||||||| ||| | ||||| | |||| | | Sbjct 33139 ACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCC 33080 Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 |||||| |||| |||||||||||||||||| |||| || || |||||||| Sbjct 33079 TCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGATGTTCAGCAGCTGCGCCTCGGG- 33021 Query 221477 GAAGTGAA--GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 | | || ||| | ||||| || ||| | || |||| || || || ||||| | Sbjct 33020 GCTTTCAAACGGGTA-ACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCGATTC 32962 Query 221535 CGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 | || |||||||| | | ||||||| ||||||| ||||| ||||| ||||| | | Sbjct 32961 CTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCT 32902 Query 221595 CGATCAGATTGTTGAGGTT-CAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 |||| | ||||| | ||| | || |||||||| ||| || | || || Sbjct 32901 CGATGATCTTGTTCAAGTTTCTGACA-ATGACTTTGGTCAC-------AGATGCTAGTTT 32850 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 || || ||| |||| || |||||| | | | | || || |||| | | Sbjct 32849 TTTAAAGTCAAAAGTCCGC--TC----AGGGGTGACGTACATG--TTGAGCGCAATGGAG 32798 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 ||||| ||||| || || ||||| || | | |||| || | | ||| ||||| |||||| Sbjct 32797 GCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGG 32738 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||||| ||||| || ||||| | | || || ||| || ||| ||||| ||| Sbjct 32737 TTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTG 32678 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| | || || || || ||| | | | | || || ||| | | Sbjct 32677 TACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCGTGCCACACCTG- 32619 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 ||| || ||||| | |||||| ||||| ||| ||||| || |||||| | Sbjct 32618 CTGAGCCTTCACCACACGCTTGACCCTCCCCTC---CTTCTCATATGAAGTGTAGAGCTT 32562 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 ||||||| ||||| | ||||||||| || |||||| ||||||||||||| Sbjct 32561 CTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGA 32502 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||||| | |||| || || |||| |||||| | ||| ||||||||||| || | || Sbjct 32501 CCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGGGCGTAGAA 32442 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 || ||||||| || |||||||||| || |||| ||| |||| |||| || ||||| Sbjct 32441 AAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAA 32382 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 | || ||||||||||||||| || | ||| | || ||||||| |||||||| || Sbjct 32381 CACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCC 32322 Query 222193 CTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA 222252 ||| || || | | || |||| | | | || | || || | ||||| || Sbjct 32321 CTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGA 32262 Query 222253 TCGACCGTTGGTGCCCTTAATGTACGCACCGCCG--GCCCTCAGGTTACTGGCAGACATG 222310 ||||| ||||| |||||| || || | | | || | | ||| ||| || Sbjct 32261 GTTGCCGTTTGTGCCGGCAATGTA-GCTCC-CTGTTGATCTGATGCAGCTGACAGCCACA 32204 Query 222311 CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCC 222370 ||||| || || || || ||||| | ||| || ||| |||||||| |||||| Sbjct 32203 CCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCT 32144 Query 222371 TCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAA 222430 || || ||| ||||| | | ||||| || || |||| ||||| || ||| | Sbjct 32143 TCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTA 32084 Query 222431 CAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTAC 222490 | ||| || || || || || |||||| || || | | |||| ||| | ||| Sbjct 32083 CCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAG 32024 Query 222491 GTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATG 222550 ||||| | | || | |||||| | ||| || | | |||||| |||| Sbjct 32023 GTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTCATGAGCATG 31964 Query 222551 TACTGGGGCC--TC-TCCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGA 222607 | |||||| | || |||| || || || || |||||||| || |||||| Sbjct 31963 TGCTGGGGTCGTTCGGCCACTTTGCCGTT-GATCT--TCAGCAGGTAGGACCGCTCCAGA 31907 Query 222608 GTCTTGAACCCAAAGTAGTTG 222628 |||||||| |||||| ||||| Sbjct 31906 GTCTTGAAGCCAAAGAAGTTG 31886 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 221036 GAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCC 221095 || || |||||| | | |||| | | |||||| || |||| || |||||||| | Sbjct 33451 GATCCGTTGTTGCCAATGAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTC 33392 Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 || | |||| || || ||||| | || || ||||| ||||| ||||| | | Sbjct 33391 AGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTG 33332 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 || | ||| ||| | | |||||| ||||||||||||||||||||| || ||| | Sbjct 33331 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAG 33272 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247 || |||||||| || |||| ||| || ||||| Sbjct 33271 GCCGTGGGCATCGGGGCCAGCAGTAGGCTGTT 33240 >seq134 Length=707179 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || |||| || ||||||||||||||||| ||| Sbjct 318802 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAG 318861 Query 26305 AGGGTCGGCGACTATCA 26321 |||||||||| || || Sbjct 318862 CGGGTCGGCGAGTACCA 318878 >seq30 Length=3550406 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||| |||||||| |||||||||| || || | ||||||| || ||||||||| Sbjct 772897 CTTCATAAAGAGGTCTGGGATCCACAAGGCGAAGAACAAGTCTCTGGCCCTCTGCTCCTC 772838 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 ||| |||| ||| ||| || || || ||||| | ||| |||||||||||||| Sbjct 772837 TTTACCGGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCAAAATGCCACGGCTCCAG 772778 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCT 222182 || ||||| | || ||||||| || Sbjct 772777 GTACACGGCGAAGGCCCCGGGTCTCT 772752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928771723135360