Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5 165 5e-35 seq2 116 2e-20 seq223 102 5e-16 seq631 100 2e-15 >seq5 Length=8875486 Score = 165 bits (182), Expect = 5e-35 Identities = 369/552 (67%), Gaps = 4/552 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| |||||| | || || || || |||||| | |||| || ||| Sbjct 3525732 GAATATCTATTGGCATTGATCTGGGCACCACCTATTCTTGTGTCGGGGTTTTCCAGCATG 3525673 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| || || || ||||| ||||| || || ||||| || || ||||| | | Sbjct 3525672 GCAAAGTGGAGATCATCGCCAACGACCAGGGAAACAGAACCACTCCCAGCTATGTGGCCT 3525613 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| || || || |||||||||||||| || |||| | ||| || || | Sbjct 3525612 TTACTGACACAGAGAGGCTCATTGGAGATGCTGCCAAGAATCAGGTTGCCATGAACCCCG 3525553 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 | || || || |||||||| || || | || || | || ||| || | ||||| Sbjct 3525552 TCAACACAATCTTTGATGCCAAGAGGCTCATCGGGAGAAAGTTTACCGACCCTGTTGTCC 3525493 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 | ||||| ||| | ||||| || || ||||| |||| | | || ||||| | | Sbjct 3525492 AGTCTGACATGAAGCTCTGGCCCTTCAAAGTGATCAATGATAGCGGAAAACCCAAAGTCC 3525433 Query 474624 AAGC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 | | | || | ||| || || ||| || | || ||| |||| || || ||||| Sbjct 3525432 AGGTTGAGTATAA--AGGGGAGACCAAAGCCTTCTACCCAGAAGAAATCTCCTCCATGGT 3525375 Query 474682 TTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 | | |||||||| | | ||| | || || |||||| |||| | | ||||| Sbjct 3525374 CCTGGTTAAAATGAAGGAGATCGCTGAAGCCTACCTGGGACAAAAAGTGTCAAACGCAGT 3525315 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || |||||||| ||||||||||| || || | ||||| || || || || || Sbjct 3525314 CATCACAGTTCCAGCTTATTTTAATGACTCCCAGAGGCAAGCCACCAAGGACGCTGGGGT 3525255 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || | || || |||||| | | || || ||||| || |||||||| || | || || Sbjct 3525254 GATCTCTGGACTGAATGTTCTGAGGATCATAAATGAGCCCACAGCAGCAGCCATCGCCTA 3525195 Query 474862 TGGTCTTGATAA 474873 || || ||||| Sbjct 3525194 CGGCCTGGATAA 3525183 Score = 141 bits (156), Expect = 6e-28 Identities = 445/677 (66%), Gaps = 12/677 (2%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 |||||||||||| | || ||| | | || || || || || ||| |||| || Sbjct 3524950 ACTGCTTGTGAAAGAGCAAAGAGGACCCTGTCCTCCAGCACCCAGGCTAGCCTTGAGATT 3524891 Query 475556 GATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAAATTTGAAGA 475614 || ||||| ||||| || || || || || ||| || |||||||| ||||| || Sbjct 3524890 GACTCTCTGTTTGAGGGTATCGACTTCTACACCTCA-ATCACAAGGGCACGCTTTGAGGA 3524832 Query 475615 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT-TCTCAGAGATT 475673 | || || ||||| || |||| | || || ||||| |||| ||| |||| Sbjct 3524831 GCTCAACTCAGAGCTCTTCAGGGGAACACTGGATCCAGTTGAG-AAGTCTCTGCAAGATG 3524773 Query 475674 CTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATT 475732 | || || || || || |||| |||||||||| || || || || || || ||||||||| Sbjct 3524772 CCAAGCTGGATAAGTC-CAAGATCCATGAAATCGTCCTGGTTGGTGGCTCCACAAGAATT 3524714 Query 475733 CCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGT 475791 || ||||| |||| ||| || | | ||||||||| | | | || || | || | Sbjct 3524713 CCCAAAAT-CCAGAAGCTCTTGCAGGACTTTTTTAATGGCAGAGAATTGAACAAGAGCAT 3524655 Query 475792 AAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCA 475851 || || ||||||||||| || ||||| || || ||||| || ||||| | ||| | Sbjct 3524654 CAACCCAGATGAAGCTGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCTGATGGGTGA 3524595 Query 475852 ATCAGACGAGAAACTAAATAATATT--GTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 || ||||| | || ||| |||| | || || |||| || || | || Sbjct 3524594 --CACTTCAGAAAATGTCCAAGATTTGCTACTGCTGGATGTGGCTCCTCTGTCTCTGGGC 3524537 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 |||| || | || || ||||||| | | || | |||| || | ||||| | Sbjct 3524536 ATTGAGACTGCAGGTGGAGTTATGACACCTTTAATCAAACGAAACACCACCATCCCCACC 3524477 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029 || | | | | || || || ||||| ||||| || || ||| || || | Sbjct 3524476 AAGCAGACCCAGATCTTCTCTACATATTCAGATAACCAGCCAGGTGTGCTGATTCAGGTG 3524417 Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 | ||| ||||| ||| | || || || || ||| || || | ||| | || | Sbjct 3524416 TATGAGGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTCACA 3524357 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| |||||||||||| |||| || || || | || || || || || |||||||| Sbjct 3524356 GGTATCCCTCCTGCTCCCCGAGGTGTCCCACAGGTGGAGGTAACCTTCGACATTGATGCC 3524297 Query 476150 AATGGTATTCTTAATGT 476166 ||||| ||||| ||||| Sbjct 3524296 AATGGAATTCTGAATGT 3524280 >seq2 Length=11018341 Score = 116 bits (128), Expect = 2e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| ||||| ||||| || || || ||||| || || |||||||| |||||||||| Sbjct 7191457 ATGCAGTTATTACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACTAAAGATG 7191398 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| || |||||||| | || || || ||||| ||||| || || || Sbjct 7191397 CTGGAACCATTGCTGGGCTTAATGTGCTGCGCATCATCAATGAGCCAACTGCTGCAGCCA 7191338 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| || || || || Sbjct 7191337 TTGCTTATGGCCTGGACAAAAA 7191316 Score = 102 bits (112), Expect = 5e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||||||| | || || || ||||| | || || | ||| | || || Sbjct 7190243 TGAAGGTGAAAGAGCCATGACCAAGGACAATAATATTCTGGGCAAATTTGAGCTGACTGG 7190184 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| ||||| |||||||| || ||||| ||||| || |||||||| |||||||| || Sbjct 7190183 TATTCCACCTGCACCCAGAGGTGTCCCTCAGATTGAGGTGACTTTTGACATTGATGCCAA 7190124 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 7190123 TGGCATTCTCAATGTATCTGC 7190103 >seq223 Length=448970 Score = 102 bits (112), Expect = 5e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 |||||| |||| ||| | ||||| || || || || ||||| ||||| || || || || Sbjct 201998 GTAACTAATGCTGTAGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCTACC 201939 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | ||| | || || ||||| | ||||| || ||||||||||| || Sbjct 201938 AAAGATGCAGGGACCATTTCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACTGCT 201879 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||||||||| || || || || Sbjct 201878 GCTGCTATTGCTTATGGCCTCGACAAAAA 201850 >seq631 Length=169947 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || ||||| |||||||||||||||||||||||||| || |||| Sbjct 169594 ATGCTGTTATCACAGTACCTGCATACTTTAATGATTCTCAACGTCAAGCAACCAAGGATG 169653 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | || || ||||| || | || || ||||| || || || || || Sbjct 169654 CTGGAACTATCTCTGGGCTAAATGTGTTGAGAATAATCAATGAGCCCACTGCTGCAGCTA 169713 Query 474855 TTGCTTATGGTCTTG 474869 |||||||||| |||| Sbjct 169714 TTGCTTATGG-CTTG 169727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267909219801512